Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52710 110 / 6e-28 unknown protein AT2G36220 103 / 1e-25 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021354 [exp] 379 / 1e-132 AT3G52710 181 / 4e-55 unknown protein Lus10014206 [exp] 186 / 1e-56 AT3G52710 176 / 2e-53 unknown protein Lus10022709 [exp] 101 / 3e-26 AT2G36220 77 / 1e-17 unknown protein Lus10022708 [exp] 83 / 8e-19 AT3G52710 100 / 7e-26 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G079500 [exp] 142 / 4e-40 AT2G36220 140 / 1e-39 unknown protein Potri.006G212800 [exp] 134 / 5e-37 AT3G52710 153 / 2e-44 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017030 pacid=23172966 polypeptide=Lus10017030 locus=Lus10017030.g ID=Lus10017030.BGIv1.0 annot-version=v1.0 ATGCCACCGGTGGATCTGGAGACTCTAGTAGGATCAGTCTGCTCAGGCGGCGGCTGCAGCGACCGCAAAATCACCTGCGAAACGCTCGCGCCGGCGGCTG TCCAGGAGAATCGGAATCAGCAAAAGATAACCGCGGAATTCGATCAATCGTCCGATTGTCCGCCGGAGTCGTTCTGGCTTTCCAAGGATGCGGAGCTGGA TTGGCTCGATCGCAACGCGTTCATCACACGGCAAGGCTCCACCAGAGGCAGTAGCTTCAATTCGACGAACTTGATCCCTGGTTTTCATCCGAATACAGCG AACTCATCATCTCAGTCCCAGCGGTACTCGAATATCAAGTCCAAAGCGTCGATTATCGGATTGCCGAAGCCACAGAACTCTTGCTTCATCGACGGCAAGA GCCGCCGGCATACCAAGCCGCTCAACACGCACCTCTTCCCGAAGAGGCCGGTCTCCGCAACAGGGAAATCATCCTCCTCTGTTGCCGAGCCTGGTTCGCC GAAGGTGTCGTGTATGGGAAGGGTGCGGTCGAAGAGAGATCGGAACCGGAGATTGCGTAGCCGCCAACGGTCAAAGCGATCCACGGATCAGCCGGAGTTG AAGAAGGTCAAATCGGTGAGGAGGCGGGAGTCGTCGTCCTCGTCATCGTCGGGATTCGTGGCGAGTATTCGTTCGATTTTCAAGACGTGCTCGAAGTCAA AGAAGCACGAGAAGAAGAGCGAATCCGCAGACTCGTCGAGGAAGAGCGAGGCGGCGGCGAGAACGAGCGACATTAGGGATCGACTTCCGGCTCCCGAAAG AGACGCTCCAGGGAAGAAGAGCGGCGGCAAAGAAGCTGCCGCGACGGAGGCGACAGGTAGTTTGGGCGGGATGATGAAATTTTCGTCGGGGAGGAGATCT GAAGATTGGGCCTGCGTAATTGACGTGGCCTGA
AA sequence Show only first row Show all	>Lus10017030 pacid=23172966 polypeptide=Lus10017030 locus=Lus10017030.g ID=Lus10017030.BGIv1.0 annot-version=v1.0 MPPVDLETLVGSVCSGGGCSDRKITCETLAPAAVQENRNQQKITAEFDQSSDCPPESFWLSKDAELDWLDRNAFITRQGSTRGSSFNSTNLIPGFHPNTA NSSSQSQRYSNIKSKASIIGLPKPQNSCFIDGKSRRHTKPLNTHLFPKRPVSATGKSSSSVAEPGSPKVSCMGRVRSKRDRNRRLRSRQRSKRSTDQPEL KKVKSVRRRESSSSSSSGFVASIRSIFKTCSKSKKHEKKSESADSSRKSEAAARTSDIRDRLPAPERDAPGKKSGGKEAAATEATGSLGGMMKFSSGRRS EDWACVIDVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52710			unknown protein		Lus10017030 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Lus10029921 [exp]	2.4	0.9701
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10017629 [exp]	3.9	0.9656
AT2G41480			Peroxidase superfamily protein...		Lus10007051 [exp]	5.5	0.9626
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007511 [exp]	8.2	0.9681
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10022756 [exp]	9.8	0.9651
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10000173 [exp]	10.5	0.9646
AT2G43590			Chitinase family protein (.1)		Lus10003587 [exp]	10.6	0.9587
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10036800 [exp]	12.0	0.9571
					Lus10004280 [exp]	14.7	0.9582
AT2G18890			Protein kinase superfamily pro...		Lus10025468 [exp]	16.0	0.9548

Compare expression of checked genes

Lus10017030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.