Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32430 827 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 431 / 6e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 399 / 5e-127 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 397 / 3e-126 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 389 / 4e-123 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G16480 390 / 2e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G18750 387 / 6e-122 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09040 390 / 1e-121 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02010 383 / 6e-121 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21300 380 / 2e-119 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021355 [exp] 1502 / 0 AT4G32430 835 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 402 / 6e-129 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004892 [exp] 402 / 2e-127 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032091 [exp] 398 / 8e-127 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 394 / 4e-125 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 395 / 6e-123 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015225 [exp] 384 / 2e-120 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004081 [exp] 384 / 5e-120 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 379 / 4e-119 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G042100 [exp] 975 / 0 AT4G32430 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 414 / 6e-132 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G021700 [exp] 405 / 9e-131 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 408 / 4e-129 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G111300 [exp] 404 / 2e-128 AT3G02330 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 404 / 2e-127 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 398 / 1e-126 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G187800 [exp] 402 / 4e-126 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G058700 [exp] 391 / 3e-123 AT1G15510 1113 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G080200 [exp] 386 / 4e-122 AT1G11290 447 / 3e-145 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10017032 pacid=23172976 polypeptide=Lus10017032 locus=Lus10017032.g ID=Lus10017032.BGIv1.0 annot-version=v1.0 ATGATCGCCCGCCAACAGTCTCTCAAAGCCCTCCAAGTAGTAGCCGAGCAACGATCAACTCGCTCTTTAAACCCTCAACTACTAAACCATGCATCCCAAC TGTTCGACAAAAGTCCGGCACGCGTTAACCGTTCCATGGTCGAATTTCTTCGACGAAAGCTCCCGTTTCAAGCGCTTGAGGTATTCAGCAAGCAGTTTCA AATGGGCGGAAATGTTGATCAGATTACTATTGCTCTCTCACTCAAAGCTTGCAGTGGGGACCCATTTCTGGGCTCTCAAATCCATGGCTTTTCTGTTATT TCTGGCTTCTTTTCGTCTTATATCGCCGTGGCAAATTCGTTGATGAACATGTACTGTAAAGCTGGAGAATTTGCTAAGGCTGTGTGCATCTTTGACAAGT TGGCTGACCCTGATGCTGTTTCGTGGAACACAGTGCTCTCAGGTTTTAGTAGGAGTGAAGATGCTCTGAGTTTCGCTCGTCGAATGAATGCTAGTGGGGT TGTTTTTGACCCTGTAACTTATACTACCGCTCTTTCCTTTTGCTTGAGGCATGATGAATTTCGATTTGGATTGCAGTTACACACCTGTATAGCAAAGTCT GGGTTAGATTGTGAAACTTATGTTGGAAATGCACTTATAAGTCTGTATTGTAGATGGGAACGGCTAACCGAGGCTAGGAGAATCTTCGACGAAATGCCAA GTAAGGATTTGGTTTCTTGGAATGCAATCATATCAGGGTATAGCCAGGGAGGTATTCATGGGTTAGAAGCGATATCAATGTTCATTGAGACTGTTAGAAG AGGCATAGAGCCTGATCATGTCTTACTGACAGGAACAGTTTCAGCTTGTGGTCACGAGCGCAACTTAGAACTGGGGAGACAGATGCATAGTTTCAGCATA AAACGAGGATATGGGAAACATGTTTCTGTCGGGAATGTCCTGATATCGACATATTCAAAGTGCGATCATGTTGAAGAAGCTGCATTGGTGTTCAAAAATA TGAATGAGCGCAATGTTGTGTCGTGGACGACAATGATAACCATAAACGAAGAAGCCGCTGTGTCACTCTTTGATGAGATGAGATTAGACGGTGTTCCGCC TAATCACGTGACATTTGTGGGATTGCTCCATGCTGTGACAGTTCGAGATTTGGTGGAACATGGCAAGAAGATTCATGGGGTTTGTTTGAAAGCAGGTTTC TCGACAGAACCAAACGTAAGCAATAGCATCATCACAATGTATGCTAAGTTCAAGTCCATGGATGATTCGGAGAAAGTATTTCAGGAGCTTGATCAGAGAG AGATCATAACTTGGAATGCTTTAATCTCGGGGTATTCACAGAATGGATTGAGTCAAGCAGCTATTAAGACCTTCTTCATGTCTGCAGTTTCAGAAGTGAA GCCCAACCAATACACTTTCGGTAGTGTGTTGAGTGCCATAGGTGCAGCTGAGGATGTGTCTTTAAGACATGGCAAAAGGTGTCACTCCCAAATCATAAAA CTTGGATTAAACACGGACCCAGTTGTCTCCTCGGCACTCCTTGACATGTACGCAAAGCGTGGCAGCATGTTTGAGTCCGAAAGAGTCTTCTCCGAGACAA CTCAGCAAACCCAAGTCTCGTGGACATCGATGATATCTGCCTATTCCAGACACGGAGACTACGAATCAGTCATGATTTGGTTCAAGAGAATGATAGCAGC ACAAGTAGAACCCGATTCAATCACTTTTCTATCTGTTTTAACAGCTTGTGGTAGAAAAGGAATGATCGATACAGGACGTCATCTGTTTGACTCGATGACC AGAGACTATAAAATCGAACCATCTCCGGAGCATTACTCGTGTATGGTAGACATGTTGGGTCGTGCAGGACGACTGGAGGAGGCCAATGAGCTATTGAAAC AGATTCCAGGAGGACCGGGTTTATCAGTGCTGCAAAGCTTACTGGGATCTTGCAGGACATACGGGAATGTGGAGTTGGGAGAGAAGGCAGCTGAGGCATT GTTGGAAATGGAGCCAAATGAATCAGGGACTTACGTACTGATGGCCAACTTGTACGCTGAGAAGGGACAGTGGGATAATGTGTCCAAGTTGAAGAGGGCA ATGAGAGAAGAAGGCGTACTGAAGAAGATTGGTTTCAGCTGGGTGGACGTTGATCACGCTGCTGATGCTTCACTATCATTGCATGGGTTCTCGTCGGGGG ACATGACACATCCAATGGCGGACGAGATTCGTCAGACAGCGGAGTTTTTGGGGTTGGAGATGAAGTTCTTGAAAGAAAGTGAGATGGAGAGTTACAAGTA TCCTGCGGCGTTAGAATCCATGAGTTTTGTAGTGTGA
AA sequence Show only first row Show all	>Lus10017032 pacid=23172976 polypeptide=Lus10017032 locus=Lus10017032.g ID=Lus10017032.BGIv1.0 annot-version=v1.0 MIARQQSLKALQVVAEQRSTRSLNPQLLNHASQLFDKSPARVNRSMVEFLRRKLPFQALEVFSKQFQMGGNVDQITIALSLKACSGDPFLGSQIHGFSVI SGFFSSYIAVANSLMNMYCKAGEFAKAVCIFDKLADPDAVSWNTVLSGFSRSEDALSFARRMNASGVVFDPVTYTTALSFCLRHDEFRFGLQLHTCIAKS GLDCETYVGNALISLYCRWERLTEARRIFDEMPSKDLVSWNAIISGYSQGGIHGLEAISMFIETVRRGIEPDHVLLTGTVSACGHERNLELGRQMHSFSI KRGYGKHVSVGNVLISTYSKCDHVEEAALVFKNMNERNVVSWTTMITINEEAAVSLFDEMRLDGVPPNHVTFVGLLHAVTVRDLVEHGKKIHGVCLKAGF STEPNVSNSIITMYAKFKSMDDSEKVFQELDQREIITWNALISGYSQNGLSQAAIKTFFMSAVSEVKPNQYTFGSVLSAIGAAEDVSLRHGKRCHSQIIK LGLNTDPVVSSALLDMYAKRGSMFESERVFSETTQQTQVSWTSMISAYSRHGDYESVMIWFKRMIAAQVEPDSITFLSVLTACGRKGMIDTGRHLFDSMT RDYKIEPSPEHYSCMVDMLGRAGRLEEANELLKQIPGGPGLSVLQSLLGSCRTYGNVELGEKAAEALLEMEPNESGTYVLMANLYAEKGQWDNVSKLKRA MREEGVLKKIGFSWVDVDHAADASLSLHGFSSGDMTHPMADEIRQTAEFLGLEMKFLKESEMESYKYPAALESMSFVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32430			Pentatricopeptide repeat (PPR)...		Lus10017032 [exp]	0	1
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10035164 [exp]	1.4	0.9166
AT1G69350			Tetratricopeptide repeat (TPR)...		Lus10030415 [exp]	2.4	0.9108
AT4G28210		EMB1923	embryo defective 1923 (.1)		Lus10033723 [exp]	3.2	0.9147
AT5G66500			Tetratricopeptide repeat (TPR)...		Lus10041770 [exp]	3.9	0.9064
AT5G14050			Transducin/WD40 repeat-like su...		Lus10036236 [exp]	6.9	0.9078
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031764 [exp]	6.9	0.8962
AT2G35390			Phosphoribosyltransferase fami...		Lus10040098 [exp]	8.1	0.8590
AT5G28460			Pentatricopeptide repeat (PPR)...		Lus10018279 [exp]	10.4	0.8470
AT3G16610			pentatricopeptide (PPR) repeat...		Lus10035788 [exp]	13.0	0.8573
AT1G79220			Mitochondrial transcription te...		Lus10031762 [exp]	16.9	0.8636

Compare expression of checked genes

Lus10017032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.