Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52720 203 / 4e-64 CAH1, ATACA1, ACA1 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) AT1G08080 191 / 1e-59 ATACA7, ACA7 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) AT1G08065 152 / 3e-44 ATACA5, ACA5 alpha carbonic anhydrase 5 (.1) AT2G28210 140 / 1e-40 ATACA2 alpha carbonic anhydrase 2 (.1) AT4G20990 141 / 2e-40 ATACA4, ACA4 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) AT5G04180 139 / 3e-39 ATACA3, ACA3 alpha carbonic anhydrase 3 (.1) AT5G56330 119 / 3e-31 ATACA8, ACA8 A. THALIANA ALPHA CARBONIC ANHYDRASE 8, alpha carbonic anhydrase 8 (.1) AT4G21000 114 / 4e-30 ATACA6, ACA6 A. THALIANA ALPHA CARBONIC ANHYDRASE 6, alpha carbonic anhydrase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021356 [exp] 475 / 4e-171 AT3G52720 231 / 6e-75 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) Lus10022710 [exp] 264 / 6e-88 AT3G52720 218 / 4e-70 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) Lus10021455 [exp] 183 / 2e-56 AT1G08080 343 / 1e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10021454 [exp] 179 / 1e-54 AT1G08080 300 / 1e-102 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10016104 [exp] 178 / 3e-54 AT1G08080 344 / 7e-120 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10042030 [exp] 178 / 1e-53 AT4G20990 313 / 9e-107 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10018017 [exp] 175 / 3e-52 AT4G20990 240 / 4e-78 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10016105 [exp] 172 / 3e-52 AT1G08080 333 / 1e-115 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10042013 [exp] 157 / 7e-46 AT4G20990 224 / 2e-72 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G079600 [exp] 224 / 2e-72 AT3G52720 271 / 8e-91 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) Potri.006G212900 [exp] 200 / 4e-63 AT3G52720 261 / 5e-87 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) Potri.004G212800 [exp] 174 / 7e-53 AT1G08080 347 / 3e-121 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.006G047500 [exp] 171 / 2e-51 AT4G20990 276 / 5e-93 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.009G010200 [exp] 166 / 1e-49 AT1G08080 342 / 3e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.006G121900 [exp] 164 / 3e-49 AT1G08080 289 / 4e-98 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.016G043700 [exp] 164 / 4e-49 AT4G20990 306 / 4e-105 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G047400 [exp] 160 / 1e-47 AT4G20990 289 / 4e-98 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00194 [flax] [poplar] Carb_anhydrase Eukaryotic-type carbonic anhydrase
Representative CDS sequence Show only first row Show all	>Lus10017033 pacid=23172934 polypeptide=Lus10017033 locus=Lus10017033.g ID=Lus10017033.BGIv1.0 annot-version=v1.0 ATGGGTACAACAACTGATCAAACAGCGTCATTCACCACCTTGTCTGTTTTAGCAGTCATTGTGGCTCTGTCTCTTGCTCTCTGTTCTTGTCTTGAAGCCG CTCCTCCTGCTGCTCCATCAGGGTTTGTGAACTTTGGTTACAGGGGGCCAAACGGACCTCAGAGATGGGGGAGCTTGACCCCCTATTACAAAGAGTGCGA TATTGGGAAATTGCAGTCTCCTATCGACGTTAACAGGCTTGATGTTGTGGAGAACAAGAAGCTTGAAAGGTTGAAAGGGAATTACATTGCTGTTAATGCC ACTCTTATTAACACTGGCCGTAGCATCATGGTTCATTACGACGATATGCACGCTGGAGAGCTGGAAGTAGATGGGAAAAAATATAAATTGCAGCAAATGC ATTGGCATTCTCCTTCAGAGCACACTTTTGATGGACACCAGTATCCATTGGAGCTCCACTTAGTTCATCAAGCAGACGATGGTATTTTCACAGTTGTATC AGTCCTCCATGAGTACGGACCCAATGAAGATTCACTCATCAAGAAGATTAGCGTGGAGTTGGGCGAGCTAGCAGAGGAGAAGAAGTTGTCGTCGCAGAAA GCAGGAGGAACAGTAATAGTAACACCACCACAAGTGAAGCTAAGGAAGAAAATGGAGTACAAGATGCTGAAGAAGAAAACACACAAATACTACAGATACA CTGGCTCCCTCACTTCTCCTCCTTGCACTCAAAACGTAACCTGGAACGTCCTAGCTAAGGTGAGGAGTGTGTCAAGGGAACAGGTGAAAGCTCTGAGAGA TCTATTATCGGCAGATTGCAAGGCGAATGCTAGGCCGTTACAGCCTCTTAATGGCAGGAAGGTTGAGGTTTACAAGGAACCTAATGATCTCTGA
AA sequence Show only first row Show all	>Lus10017033 pacid=23172934 polypeptide=Lus10017033 locus=Lus10017033.g ID=Lus10017033.BGIv1.0 annot-version=v1.0 MGTTTDQTASFTTLSVLAVIVALSLALCSCLEAAPPAAPSGFVNFGYRGPNGPQRWGSLTPYYKECDIGKLQSPIDVNRLDVVENKKLERLKGNYIAVNA TLINTGRSIMVHYDDMHAGELEVDGKKYKLQQMHWHSPSEHTFDGHQYPLELHLVHQADDGIFTVVSVLHEYGPNEDSLIKKISVELGELAEEKKLSSQK AGGTVIVTPPQVKLRKKMEYKMLKKKTHKYYRYTGSLTSPPCTQNVTWNVLAKVRSVSREQVKALRDLLSADCKANARPLQPLNGRKVEVYKEPNDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52720		CAH1, ATACA1, A...	A. THALIANA ALPHA CARBONIC ANH...		Lus10017033 [exp]	0	1
AT3G55240			Plant protein 1589 of unknown ...		Lus10030322 [exp]	1.0	0.8254
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Lus10017882 [exp]	13.0	0.7858
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10040990 [exp]	13.5	0.8023
AT1G49230			RING/U-box superfamily protein...		Lus10006785 [exp]	21.6	0.7808
AT5G48250	CO	COL10	B-box type zinc finger protein...		Lus10036419 [exp]	25.7	0.7495
AT1G08500		AtENODL18	early nodulin-like protein 18 ...		Lus10036067 [exp]	27.7	0.7825
AT4G24015			RING/U-box superfamily protein...		Lus10032418 [exp]	27.7	0.7784
AT3G25400			unknown protein		Lus10003475 [exp]	31.2	0.6761
AT3G07880		SCN1	SUPERCENTIPEDE1, Immunoglobuli...		Lus10010491 [exp]	31.9	0.7633
					Lus10026168 [exp]	33.5	0.7233

Compare expression of checked genes

Lus10017033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.