Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03880 356 / 4e-122 Thioredoxin family protein (.1) AT4G10000 78 / 1e-15 Thioredoxin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021357 [exp] 512 / 0 AT5G03880 426 / 2e-149 Thioredoxin family protein (.1) Lus10001283 [exp] 117 / 2e-29 AT4G10000 395 / 5e-138 Thioredoxin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G213000 [exp] 377 / 1e-130 AT5G03880 455 / 8e-162 Thioredoxin family protein (.1) Potri.013G102000 [exp] 114 / 1e-28 AT4G10000 434 / 2e-153 Thioredoxin family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017034 pacid=23172969 polypeptide=Lus10017034 locus=Lus10017034.g ID=Lus10017034.BGIv1.0 annot-version=v1.0 ATGGCGGGAGTCATCAATGTCTCACACTTTCCTATCTTCCGTACGGTCACTCGGAAATCAGTTGCCGCCGGGAGCAGAAGCTCAATTCCGGTAATCAGGG CCTCCTCTTCCTCGCCGGGGACACCTCCTCCGGACTCTAGCTCGACGACGACGACGACTGCAACCACCACAGGAAGAGAAGAAGAATCAGCCGCTAAATT TACTGCTCCAGCAGGTTTCAAGACACCGGAGCCGAAGCGGTTCGCCGTCAGGCCGGATAAGGGAGGTGATGTTGCTGGAGCTGCTCTTTCCATATTCTTC CGGTTCGGGACTGGTGTTTTTCTCGACGGGTACTCTGTCTCCTTCGTGGGCAAAGATGAGATTCCATCGGACCAATATGCTCTAGAACTGTTTGGTTACA AAGTGAAAGAGACGTCGAAACTAGGACCTCGTCCAGAGAAACCGATTGAGATCTATGAGTTTGAAAGGGAAATTGTTGCAGTATTGGATCTCGATGTTCT ATTTTATCCCTGCCCAAGGGACGGTCCCAATTTTCGACCCAAGGCTATTGAGTTGGGTGGCAAGAAGCAATTTCCGTATATGGTTGATCCAAATACTGGA ACTGCAATGTATGAGTCCGATCAAATTATCAAGTATCTGGTTGATAAATACGGTAATGGAGAAGTTCCTCTCATGCTTTCGCTCGGCCTTCTAACGGTTA GCTCTTGCTCTTCAAGTTTCCTTCTCTCGTCAACCTGTAATTTAAGCATCAAGGATCTTTTAGATGGTTGCTTGATTACTCTTATTATCTTGCAGACTTT AACTGCAGGCCTTGCTATGATTGGTCGTTCGGGAAGGCTCACTCATGATCTTTTCAACTACCGTGTCAATGCTATACAGGGTCAGCAATATCGCCCGTCC AAATTACCTCCAAAACCACTAGAGATATGGGCATATGAGGGCTCTCCTTTCTGCAAGCTTGTCCGTGAAGTTCTCGTGGAGTTGGAACTACCGCATATTT ATCGGAGTTGTGCCCGTGGCAGCCCAAAACGGCAGATACTGTATGATAAAACTGGAACCTTTCAGGCACCTTACCTGGAAGATCCAAACACGGGAGTCGA GATGTACGAAAGTGCAGAAATCGTGGAGTACCTGACCGCAACTTATGCCGTGTAA
AA sequence Show only first row Show all	>Lus10017034 pacid=23172969 polypeptide=Lus10017034 locus=Lus10017034.g ID=Lus10017034.BGIv1.0 annot-version=v1.0 MAGVINVSHFPIFRTVTRKSVAAGSRSSIPVIRASSSSPGTPPPDSSSTTTTTATTTGREEESAAKFTAPAGFKTPEPKRFAVRPDKGGDVAGAALSIFF RFGTGVFLDGYSVSFVGKDEIPSDQYALELFGYKVKETSKLGPRPEKPIEIYEFEREIVAVLDLDVLFYPCPRDGPNFRPKAIELGGKKQFPYMVDPNTG TAMYESDQIIKYLVDKYGNGEVPLMLSLGLLTVSSCSSSFLLSSTCNLSIKDLLDGCLITLIILQTLTAGLAMIGRSGRLTHDLFNYRVNAIQGQQYRPS KLPPKPLEIWAYEGSPFCKLVREVLVELELPHIYRSCARGSPKRQILYDKTGTFQAPYLEDPNTGVEMYESAEIVEYLTATYAV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03880			Thioredoxin family protein (.1...		Lus10017034 [exp]	0	1
AT5G04900		NOL	NYC1-like (.1)		Lus10033408 [exp]	1.4	0.9329
AT5G03880			Thioredoxin family protein (.1...		Lus10021357 [exp]	2.4	0.9394
AT2G32040			Major facilitator superfamily ...		Lus10006106 [exp]	3.9	0.9093
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Lus10018218 [exp]	6.2	0.9270
AT2G23840			HNH endonuclease (.1)		Lus10007425 [exp]	7.5	0.9099
AT2G34860		EDA3	embryo sac development arrest ...		Lus10024221 [exp]	7.7	0.9264
AT5G35170			adenylate kinase family protei...		Lus10036326 [exp]	8.7	0.9214
AT2G38330			MATE efflux family protein (.1...		Lus10012227 [exp]	11.5	0.9126
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Lus10035853 [exp]	11.7	0.9204
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10043323 [exp]	12.2	0.9143

Compare expression of checked genes

Lus10017034 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.