Plant FIBer expression Database

Lus10017035 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G03890 62 / 7e-12 unknown protein
AT3G10120 61 / 2e-11 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021358
[exp]
182 / 1e-58 AT3G10120 122 / 2e-35 unknown protein
Lus10002068
[exp]
41 / 0.0001 AT4G21920 65 / 1e-14 unknown protein
Lus10015117
[exp]
39 / 0.0009 AT5G03890 44 / 3e-06 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G213100
[exp]
106 / 4e-29 AT3G10120 122 / 9e-36 unknown protein
Potri.016G079700
[exp]
96 / 4e-25 AT3G10120 114 / 1e-32 unknown protein
Potri.004G178500
[exp]
40 / 0.0001 ND /
PFAM info
Representative CDS sequence
>Lus10017035 pacid=23173015 polypeptide=Lus10017035 locus=Lus10017035.g ID=Lus10017035.BGIv1.0 annot-version=v1.0
ATGGGGAATTGCATGGTTGTAGAAGAGAAAGTGGTGAAGGTGATGAGACCAGATGGGAAGATCTTGGAGTACACCACACCAATCCATGTCCACCAAGTTC
TCTCAGATTTTCCAGGCCAATATTCAGCTCTAGCAGTAGCAGCAGCAGCAGCAGCAGCAAGTGATTCATCATCGGTTCAGCAGCATTATTTGCTCCCAGA
TTCCAAGCTTCTTGGTGGGAATTTTTACTGTCTTGTTCCTGTTCCTGTTCCTTCTTCAGCGTCTCCATCGCCGCAAAAATTAGTGGTTAAGAAGAAGACG
ACGAAGAAGGTGAGGTTCTCTGTTCCAGAAGTAGAAAAACCGAGCACCAAGAAGGAAGAAGAAAAAGACTGTGAAGAGAAAAGTGGAGGAGGAGTGGTGA
GGATTAAGTTGGTGATTAGCAAGCAGGAACTGGAGGATTTGCTGAAGAGAGGTGGAGTTTCTATGAGTGACATGGTTTCTCATCTTCAGGGTCAACAACA
GCAGAGACTGGTCAAGAAAGTTGCAGAAGAACAAGAAGAAACTGATGATGATACGGAGAGATTTTGGAAGCCTGCATTAGAGAGCATTCCTGAGTTGGAT
TTGTAA
AA sequence
>Lus10017035 pacid=23173015 polypeptide=Lus10017035 locus=Lus10017035.g ID=Lus10017035.BGIv1.0 annot-version=v1.0
MGNCMVVEEKVVKVMRPDGKILEYTTPIHVHQVLSDFPGQYSALAVAAAAAAASDSSSVQQHYLLPDSKLLGGNFYCLVPVPVPSSASPSPQKLVVKKKT
TKKVRFSVPEVEKPSTKKEEEKDCEEKSGGGVVRIKLVISKQELEDLLKRGGVSMSDMVSHLQGQQQQRLVKKVAEEQEETDDDTERFWKPALESIPELD
L

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G10120 unknown protein Lus10017035
[exp]
0 1
AT1G56345 Pseudouridine synthase family ... Lus10029848
[exp]
4.8 0.9056
AT5G48490 Bifunctional inhibitor/lipid-t... Lus10038233
[exp]
7.5 0.9388
AT5G09270 unknown protein Lus10020609
[exp]
12.5 0.8692
AT3G53580 diaminopimelate epimerase fami... Lus10025303
[exp]
14.1 0.9225
AT5G55410 Bifunctional inhibitor/lipid-t... Lus10032575
[exp]
14.7 0.9302
AT5G48490 Bifunctional inhibitor/lipid-t... Lus10025866
[exp]
14.9 0.9229
AT3G12120 FAD2 fatty acid desaturase 2 (.1.2) Lus10021051
[exp]
19.4 0.9217
AT1G70780 unknown protein Lus10019143
[exp]
23.3 0.9104
AT4G12520 Bifunctional inhibitor/lipid-t... Lus10024626
[exp]
26.8 0.9171
AT5G25940 early nodulin-related (.1) Lus10019434
[exp]
31.3 0.9133

Lus10017035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.