Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74350 202 / 2e-59 Intron maturase, type II family protein (.1) AT5G04050 90 / 1e-19 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2) ATMG00520 42 / 0.0003 ATMG00520.1, MATR Intron maturase, type II family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021359 [exp] 439 / 3e-149 AT1G74350 838 / 0.0 Intron maturase, type II family protein (.1) Lus10027263 [exp] 94 / 6e-21 AT5G04050 690 / 0.0 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2) Lus10038971 [exp] 89 / 3e-19 AT5G04050 704 / 0.0 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G063750 [exp] 245 / 5e-75 AT1G74350 877 / 0.0 Intron maturase, type II family protein (.1) Potri.006G043650 [exp] 91 / 4e-20 AT5G04050 742 / 0.0 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017036 pacid=23172992 polypeptide=Lus10017036 locus=Lus10017036.g ID=Lus10017036.BGIv1.0 annot-version=v1.0 ATGGGCCCGAAAGCCCACTGCTATGTTCTCAGTCAGTCATCAATTAGAAAATCTGAATCCAGTTACTGTATGTCATTTGTTTGCCAGTTTGCTTCGCGCC CTATTGCAAGTAAACTGTTCGATGAAAGGCCGCTGAGCCTGAGACGAGGCATGATTCGTAGCGTCTACTTCGAAGTTCGAAGCTCCTTCGAAGTTCGAAG CTCCTTCGAAATGGTGATAATTCGATGGCTTTCAAGAGTATGCAAGTGCAAGGAGCTGCTACGTGTTATGCCGCAACAGAGTAACAACTTTAGCCGTGTC AATGGCATATGTGGGTTTGCATCGAACTTCTTTTTCAGCACTGCTCCTGCTACCGGTGATAAAGGCTTGAGAAAAATGACATTAGCTACAGACTTGGCTG ACCTAGTTGAGGCAATACCCAATCTTGGTGATAAGGTGCCAGAAAGTCGAATAAAATTGAAGAGGTACCTTGAAATCCGTATGAAGAAGAGAGTGAAGGA GCACTACGTTGATGGGAAATTTGAGAACTTGATGACCAAAGTGATTGCCAACCCAGAAACGCTTCAGGATGCTTACAACTGTATTATGGTCAATGCGAAT GTGGATATCAATTCAGAGAGCTGTAATATTGTTTGCTTTCGGTCTATGGCTGAAGAGCTCATGAATGGGACTTTTAATATCAAGGAGAACACTACTTCCA TCTCAACGAGGAGGGAGCCAAAAGAAACACTTGTTCTACCTAACCTTAAGTTGACAGTCCTTCAGGAGGCAATCAGAATGACATTGGAAGTGGTCTACCG GCCTCATTTTGCTAAAATATCACATGGTTGTAGGAGCGGGAGGAGCCACCAAACTGCTATCAAGTACATCACCAAAGAGTTAGCTAATCCTGATTGGTGG TTTACAGTGATCATAAATAAGAAGTTGGATGCTTCTGTTTAG
AA sequence Show only first row Show all	>Lus10017036 pacid=23172992 polypeptide=Lus10017036 locus=Lus10017036.g ID=Lus10017036.BGIv1.0 annot-version=v1.0 MGPKAHCYVLSQSSIRKSESSYCMSFVCQFASRPIASKLFDERPLSLRRGMIRSVYFEVRSSFEVRSSFEMVIIRWLSRVCKCKELLRVMPQQSNNFSRV NGICGFASNFFFSTAPATGDKGLRKMTLATDLADLVEAIPNLGDKVPESRIKLKRYLEIRMKKRVKEHYVDGKFENLMTKVIANPETLQDAYNCIMVNAN VDINSESCNIVCFRSMAEELMNGTFNIKENTTSISTRREPKETLVLPNLKLTVLQEAIRMTLEVVYRPHFAKISHGCRSGRSHQTAIKYITKELANPDWW FTVIINKKLDASV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74350			Intron maturase, type II famil...		Lus10017036 [exp]	0	1
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10014044 [exp]	23.6	0.7715
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10030269 [exp]	24.0	0.7870
AT5G08420			RNA-binding KH domain-containi...		Lus10026187 [exp]	39.6	0.7776
AT5G41770			crooked neck protein, putative...		Lus10041477 [exp]	40.0	0.7462
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10002657 [exp]	53.9	0.7738
AT5G36890		BGLU42	beta glucosidase 42 (.1.2)		Lus10026860 [exp]	74.6	0.7075
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10037956 [exp]	76.4	0.7354
AT3G56120			S-adenosyl-L-methionine-depend...		Lus10017739 [exp]	85.7	0.7538
AT2G30620			winged-helix DNA-binding trans...		Lus10042541 [exp]	87.0	0.7194
AT2G30620			winged-helix DNA-binding trans...		Lus10022001 [exp]	92.0	0.7393

Compare expression of checked genes

Lus10017036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.