Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G30240 105 / 2e-25 Syntaxin/t-SNARE family protein (.1) AT2G18860 100 / 6e-24 Syntaxin/t-SNARE family protein (.1.2) AT1G27700 99 / 5e-23 Syntaxin/t-SNARE family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021360 [exp] 815 / 0 AT4G30240 108 / 1e-26 Syntaxin/t-SNARE family protein (.1) Lus10007766 [exp] 115 / 8e-29 AT1G27700 292 / 2e-98 Syntaxin/t-SNARE family protein (.1) Lus10018703 [exp] 114 / 4e-28 AT1G27700 290 / 2e-97 Syntaxin/t-SNARE family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G125000 [exp] 356 / 9e-121 AT1G27700 106 / 6e-26 Syntaxin/t-SNARE family protein (.1) Potri.004G090200 [exp] 345 / 2e-116 AT1G27700 97 / 1e-22 Syntaxin/t-SNARE family protein (.1) Potri.014G019100 [exp] 110 / 5e-27 AT1G27700 276 / 1e-91 Syntaxin/t-SNARE family protein (.1) Potri.006G168800 [exp] 107 / 4e-26 AT4G30240 273 / 9e-91 Syntaxin/t-SNARE family protein (.1) Potri.018G093400 [exp] 107 / 6e-26 AT4G30240 263 / 8e-87 Syntaxin/t-SNARE family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09177 [flax] [poplar] Syntaxin-6_N Syntaxin 6, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10017038 pacid=23172986 polypeptide=Lus10017038 locus=Lus10017038.g ID=Lus10017038.BGIv1.0 annot-version=v1.0 ATGGCGTCCAGTTTTCAGCAATGGGAAGCCGATCCTCTCTTCTCAGCTGCTGAAGTTGTCCAAGACTCTGCAGATAGGATGGAGTCATTGTACCGTCTTC TTTTGCATGATCAAACCCTTATTCAAGAGGATCATTCTGAACCTAAGCTGCTTACGGCAATCGATTATCATAGACGTGATCTGGTGACTATACTTGAAAC TGCAAAGTGGCAGTTGGAAGATTTCGAAAGAGCAGTCAACTCTTCAGCAATGGCAGATAAGTCTCGATCTAAGGAAGATGTGGTAGCTAGACATAGACAG TTCATTACAGCAATTAGAGAACAGATAAAGCTCGTCGAGACAAGAATAGAGGGTCCTTCTTCGATGGGGAAGAAAAATTCTTGGGTGAATTTGAATGAAC AAGACCGGGATGGGTTGGCATTATTTCTTTCTGGTGGAAGTCTTAGAGAACATTCGAATTTGAAGTCCAGCATTGTCGATGATAGTAGCGTCTTGAGGAA GTTTCTCAATCCAACTTTGGCATCGAGTTTAGGAGATGATGAGATTGTTGAACAAGAAGTAAACGTGAAGGCACAGATGAATGGAGATGCACACTTACAC TGCGGTCTTGTTAATGGGGACATCGATCGGAACCGGAGTTCTCATTACTCGGCGAGGTCAGGTTTTGATGATTCCACAAAACCTATGCAAGAGATTTCTT GTAGTAGAGATTGCGACAAGGGCAAGTGGGACCTGGAAACCGGTGAAGCCGCTCCGAGAACTGTGTTCCATGAAAACAAATTAAGAGGAGTGTATAGTAG AACTAACTTGAGGTTCTTGAGGAATCTCTGGACCGTCTATGGAAATAGATTTAGCAGGAGCCAGACAAAGAGGTTGAAAGATGGGGAAGGACAAACGAAC TCTCCAATGGCCCCTGATGATTCTCATTATGTGCAGGACCAATATGTAGGAACAAGGTTAGGGTGTGGATTTGAAGGCTACCAAGTTCTATATTCCAGAG TTCAAGCTACGTTAGTACAGTTGCGTAGCCATGGTGGTGTGAGATACCAACTATTGCCTTCTCATGTCCAAGTAAATCGGCAGTCGGTGCAAATGATATT GACAATGGGTTTTGCCCTAGTATTTTTGGGTAAGAAACTGCAGCATATTATACAGTTAATGTTTCTGGATTGCAGTCTATCAACAAATCCTCCTCGGATG CTTGTGAAATCTCCAGGAAGCAGTAAATATTCTCTCACCATTGAATCCAAGCACAGAACATGA
AA sequence Show only first row Show all	>Lus10017038 pacid=23172986 polypeptide=Lus10017038 locus=Lus10017038.g ID=Lus10017038.BGIv1.0 annot-version=v1.0 MASSFQQWEADPLFSAAEVVQDSADRMESLYRLLLHDQTLIQEDHSEPKLLTAIDYHRRDLVTILETAKWQLEDFERAVNSSAMADKSRSKEDVVARHRQ FITAIREQIKLVETRIEGPSSMGKKNSWVNLNEQDRDGLALFLSGGSLREHSNLKSSIVDDSSVLRKFLNPTLASSLGDDEIVEQEVNVKAQMNGDAHLH CGLVNGDIDRNRSSHYSARSGFDDSTKPMQEISCSRDCDKGKWDLETGEAAPRTVFHENKLRGVYSRTNLRFLRNLWTVYGNRFSRSQTKRLKDGEGQTN SPMAPDDSHYVQDQYVGTRLGCGFEGYQVLYSRVQATLVQLRSHGGVRYQLLPSHVQVNRQSVQMILTMGFALVFLGKKLQHIIQLMFLDCSLSTNPPRM LVKSPGSSKYSLTIESKHRT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G30240			Syntaxin/t-SNARE family protei...		Lus10017038 [exp]	0	1
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10026688 [exp]	1.7	0.8428
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10036657 [exp]	2.0	0.8178
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10013021 [exp]	3.2	0.7790
AT5G52990			SNARE-like superfamily protein...		Lus10022397 [exp]	7.7	0.7832
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10000537 [exp]	9.2	0.7781
AT3G05000			Transport protein particle (TR...		Lus10004135 [exp]	17.9	0.7343
AT1G71090			Auxin efflux carrier family pr...		Lus10016705 [exp]	19.7	0.7647
AT3G12770		MEF22	mitochondrial editing factor ...		Lus10024876 [exp]	20.0	0.7697
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10014409 [exp]	20.3	0.7514
AT1G24560			unknown protein		Lus10038257 [exp]	26.0	0.7649

Compare expression of checked genes

Lus10017038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.