Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03900 520 / 0 Iron-sulphur cluster biosynthesis family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021361 [exp] 833 / 0 AT5G03900 650 / 0.0 Iron-sulphur cluster biosynthesis family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G090400 [exp] 560 / 0 AT5G03900 640 / 0.0 Iron-sulphur cluster biosynthesis family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017039 pacid=23172953 polypeptide=Lus10017039 locus=Lus10017039.g ID=Lus10017039.BGIv1.0 annot-version=v1.0 ATGGCTTCTCTGTCTTCCTGCTTCACCATATCCCCCACCAAGTCTTATCCTCCTCCTTCAATCTTCACCCGCCATTCCTTTCCCAGAAACTTTACAGCGC CACCGTTGACAGTTCCTTGCTACAAAGTCGCGAACTTCAAGGCGTCGCGGCTGGTCGTACGATCGAGCAGCATTGATGTCACGACTCCAATTAGGCCCGG TGCCGCCGTGGAGACCGACAAATTGCCGGCGGAAGTCAGGAACCGCACCATGGACGCCATCAATGAGTGCGGAGGGAGGGTTACTTTGGGTGACGTGGTA AGTAGAGCTGGGCTTAAGTTGAGTGACGCTCAGAAGGCTCTCCAGGCTCTTGCTGCTGACACTGATGGCTTTCTCGAGGTTTCAGATGATGGGGACGTAC TTTATGTTTTTCCAAAGGACTATCGCACAAAGCTTGCTGCCAAGTCATTTAGATTGAAAATTGAACCTTTGGTTGATAAGGCAAAGAGCACAGCTGAGTA TGTCATCAGAGTTTCCTTTGGTACAGCTCTAGTTGCTTCAATTGTAGTGGTGTACACCACTATACTACTACTCCTTTCAAGTAGAAGTGACGAAGACAGA CGTGAAAGACGCGGTAGATCTTATGGATCAGGATTCAATGTCTACTTTAATCCTACAGATATATTCTGGATTTGGGATCCATTTTATTACAGGAGGCGTA GAGTACAAGTAGAGGAAAATGAGAATATGAATTTCCTTGAATCCATCTTCTCATTTGTATTTGGTGACGGTGATCCAAATCAAGGACTAGAAGAAGAGAG GTGGAAGTTGATTGGACAATTCATTTCTTCAAATGGCGGTGTTGTCACAGCTGAAGAACTTGCTCCATATCTCGATCTGCAGACGACTGATGTGAATGAT GAATCATATGTCCTACCGGTTCTCCTTAAGTTTGATGGCCAGCCAGAAATTGATGATGAGGGCAATATCGTGTATCGATTTCCTTCACTTCAACGTACAG CTTCCTCTCAAAGAAGTGGTAGGAAGGAGTATGTGGGGAAGAGTAAAAGATGGGCCGAGTGGGTTGGAGGAGTTCAGAACTATCTTGAGGAAAAGAAATT GGAATTCAGTAAAACAAGTGCATCCGAAAGAGCGATGGTCATTGGCTTAGGTGGGCTCAATTTATTTGGAGTCGTTGTTCTTGGGGCCATGATGAAGGAT ATGACGTTTAGCCAAGGTGGATGGATAAAATTTGTTAGCTCCATCTTTCCTCTACTACAGATATATGCTGGTTCCTTTTTTGCAATTCCATTTGTGCGCT GGTTCCTCGTTTCGAGGAAAAATACCGAGATAGAAAAGAGAAACATTACTAGGAGAAAATTCGCAAAATCGCTTGAAACGCCTGACCTTTCGTTAAGACG GAAGCTTCTTAGTGCCCGGGATATGGCCCAGAAAACAGTGATCGGACAGGATCGCATAGTCTACAGTACTGACAGAGATATGGTTGAACAAGATTTCGAG GCTGAAGAATGGGAACGTAGATTCAGAGAGATTGAAAAATCAGAGTAG
AA sequence Show only first row Show all	>Lus10017039 pacid=23172953 polypeptide=Lus10017039 locus=Lus10017039.g ID=Lus10017039.BGIv1.0 annot-version=v1.0 MASLSSCFTISPTKSYPPPSIFTRHSFPRNFTAPPLTVPCYKVANFKASRLVVRSSSIDVTTPIRPGAAVETDKLPAEVRNRTMDAINECGGRVTLGDVV SRAGLKLSDAQKALQALAADTDGFLEVSDDGDVLYVFPKDYRTKLAAKSFRLKIEPLVDKAKSTAEYVIRVSFGTALVASIVVVYTTILLLLSSRSDEDR RERRGRSYGSGFNVYFNPTDIFWIWDPFYYRRRRVQVEENENMNFLESIFSFVFGDGDPNQGLEEERWKLIGQFISSNGGVVTAEELAPYLDLQTTDVND ESYVLPVLLKFDGQPEIDDEGNIVYRFPSLQRTASSQRSGRKEYVGKSKRWAEWVGGVQNYLEEKKLEFSKTSASERAMVIGLGGLNLFGVVVLGAMMKD MTFSQGGWIKFVSSIFPLLQIYAGSFFAIPFVRWFLVSRKNTEIEKRNITRRKFAKSLETPDLSLRRKLLSARDMAQKTVIGQDRIVYSTDRDMVEQDFE AEEWERRFREIEKSE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03900			Iron-sulphur cluster biosynthe...		Lus10017039 [exp]	0	1
AT1G03160		FZL	FZO-like (.1.2)		Lus10014666 [exp]	3.5	0.9294
AT5G14260			Rubisco methyltransferase fami...		Lus10022333 [exp]	3.5	0.9241
AT5G03900			Iron-sulphur cluster biosynthe...		Lus10021361 [exp]	3.9	0.9169
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Lus10009973 [exp]	4.0	0.9283
AT1G80030			Molecular chaperone Hsp40/DnaJ...		Lus10023122 [exp]	4.2	0.9133
AT3G23070		ATCFM3A	CRM family member 3A (.1)		Lus10022091 [exp]	4.9	0.9139
AT1G56500			haloacid dehalogenase-like hyd...		Lus10029840 [exp]	5.7	0.9275
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10037211 [exp]	6.3	0.8954
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10030258 [exp]	7.5	0.9139
AT1G80030			Molecular chaperone Hsp40/DnaJ...		Lus10011484 [exp]	11.1	0.8871

Compare expression of checked genes

Lus10017039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.