Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47960 92 / 3e-23 ATC/VIF1, C/VIF1 cell wall / vacuolar inhibitor of fructosidase 1 (.1) AT3G17140 65 / 5e-14 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G64620 42 / 9e-05 ATC/VIF2, C/VIF2 cell wall / vacuolar inhibitor of fructosidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017013 [exp] 214 / 1e-71 AT1G47960 112 / 4e-31 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10016318 [exp] 205 / 4e-68 AT1G47960 115 / 2e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10027947 [exp] 112 / 3e-31 AT1G47960 111 / 1e-30 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10016317 [exp] 110 / 2e-30 AT1G47960 115 / 2e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10000822 [exp] 109 / 2e-30 AT1G47960 113 / 1e-31 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10021338 [exp] 84 / 2e-21 AT1G47960 59 / 3e-12 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10017076 [exp] 85 / 7e-21 AT1G47960 88 / 9e-22 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10037792 [exp] 80 / 8e-19 AT1G47960 91 / 1e-22 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10017014 [exp] 72 / 3e-17 AT1G47960 56 / 4e-11 cell wall / vacuolar inhibitor of fructosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G063000 [exp] 97 / 2e-25 AT1G47960 137 / 3e-41 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.009G083500 [exp] 75 / 4e-17 AT1G47960 114 / 7e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.003G122000 [exp] 64 / 6e-13 AT5G64620 53 / 7e-09 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.008G102600 [exp] 52 / 1e-08 AT3G17130 153 / 1e-47 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.001G109700 [exp] 46 / 2e-06 AT1G47960 46 / 2e-06 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.006G134900 [exp] 45 / 6e-06 AT5G64620 76 / 2e-17 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.010G209800 [exp] 44 / 2e-05 AT5G64620 93 / 5e-24 cell wall / vacuolar inhibitor of fructosidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10017040 pacid=23172988 polypeptide=Lus10017040 locus=Lus10017040.g ID=Lus10017040.BGIv1.0 annot-version=v1.0 ATGGCAACAGTACTGATCACAACAAAACTCGCTAGTTTAGCCTTCATTTTCCTCGTGGTGGTCCTCATGATGTCCCATAACATATCACCAACAGTGGCAG ACAAGGACTTCATCGTACAAACTTGCAACAATACCCCTTTCTCCAAAACTTGTGAGTCCGCGTTGCTTGCAGACCCTCGCGGCCTCAAGGCCACCGACGT GACGTCGCTGGCCTTGGTATTGATCGACGCCGTACAGTCAAAGGGGCTGGAGATTTTGGAGGAGATACAAAAATTGCGAGTTACCAACCCTGAACTGGAG AACCCGCTCCTGGATTGTTTCGATTCTTACGATTTCTTGGCCCACGACGATCACGACAAGGCAGTTCAAGCGGTGAGTAAAGGTAACCCCAAATTTGGAG AGAACGCCATTCTCGACTCTCAAAGTCTGATACAAAACTGCGAGAATTCATTCAAAATCTCTGGAAAAAAGTTCCCCTTCACTAATCTCAACTCTGATGC TGTTGAGATCACCGATGTAACCAGGGCCGTTATCCAAATGTTGTTATGA
AA sequence Show only first row Show all	>Lus10017040 pacid=23172988 polypeptide=Lus10017040 locus=Lus10017040.g ID=Lus10017040.BGIv1.0 annot-version=v1.0 MATVLITTKLASLAFIFLVVVLMMSHNISPTVADKDFIVQTCNNTPFSKTCESALLADPRGLKATDVTSLALVLIDAVQSKGLEILEEIQKLRVTNPELE NPLLDCFDSYDFLAHDDHDKAVQAVSKGNPKFGENAILDSQSLIQNCENSFKISGKKFPFTNLNSDAVEITDVTRAVIQMLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10017040 [exp]	0	1
AT5G42170			SGNH hydrolase-type esterase s...		Lus10003720 [exp]	5.8	0.7640
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013925 [exp]	10.2	0.7107
AT3G19850			Phototropic-responsive NPH3 fa...		Lus10029070 [exp]	14.8	0.6687
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10005739 [exp]	16.4	0.6912
AT5G52260	MYB	ATMYB19	myb domain protein 19 (.1)		Lus10027456 [exp]	19.4	0.6954
					Lus10042413 [exp]	20.9	0.6529
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10032836 [exp]	22.4	0.6618
					Lus10010827 [exp]	23.2	0.6618
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10013135 [exp]	24.0	0.6618
					Lus10039269 [exp]	24.0	0.6025

Compare expression of checked genes

Lus10017040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.