Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36240 436 / 3e-151 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G09900 164 / 1e-45 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G09680 159 / 1e-43 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 152 / 8e-41 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G64320 151 / 2e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G15630 150 / 4e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63070 149 / 8e-40 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63130 147 / 4e-39 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 147 / 6e-39 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 147 / 6e-39 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021362 [exp] 679 / 0 AT2G36240 559 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10027916 [exp] 155 / 2e-41 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013841 [exp] 150 / 8e-40 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 149 / 2e-39 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012328 [exp] 149 / 2e-39 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 149 / 2e-39 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026558 [exp] 149 / 3e-39 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 147 / 6e-39 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012037 [exp] 146 / 1e-38 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G068700 [exp] 498 / 1e-175 AT2G36240 509 / 4e-178 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.003G105700 [exp] 172 / 1e-47 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.009G105600 [exp] 160 / 1e-43 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G045000 [exp] 158 / 4e-43 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 156 / 4e-42 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050180 [exp] 154 / 9e-42 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G014500 [exp] 154 / 2e-41 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G035700 [exp] 154 / 4e-41 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.005G050400 [exp] 152 / 8e-41 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.002G109500 [exp] 151 / 9e-41 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10017041 pacid=23172984 polypeptide=Lus10017041 locus=Lus10017041.g ID=Lus10017041.BGIv1.0 annot-version=v1.0 ATGGCTCGCTCTCTCGCCAACACCAACAGGATATCTGAACTCACCACGCTACTCCATTTTATTGCTTCAAATCCATGTCCCTGTAGCGAAGGTATCTTCT GTTGTCCCAGAATTGAGCCAATTTTTCAATTTTCTGTTAACGCTTACTGTAAAGCTGGGAACTTGGATTGTGGGTTGGTGGATTTTGAGAGTATGAGGAA GTTGATTGATGGGAGGCCTAGCGTAGCCGTCTACAACGCTTTGATTAATGGGTTTGCGAAATATGAGAGGCATGATCAGGCTGTGGAGGTATATAACAGG CTGTTGAAGGATAGAGTTACGCCTGATGTGTTTACTTTTAATATATTGATTAATAGTTACTGCAAGAACAGCAAGTTTGAGATGGCTTTGGAGTTGTTTA GGGAGATGAGGGAGAAGGGTTGTTGCCCTAATGCTGTTAGTTTCAATACTTTGATTAAAGGTTTCTTTAGACAAGGCAAGCTTGAAGATGGGGTTAAAAT GGCACATGAGATGATTGATCTTGGGATTGGGTTTTCAGGCGTGACTTGTGAGATTTTGGTTGATGGACTTTGTAACAAGGCAGAAGTGTTGAAGCATAGA GGAGTTGTGCCATCTGAATTTGATCTTTACGCACTTGTGGCTAGTCTTTGTGAACAACGGCATGCAGGTAGAGCGTTGGAGGTGTTGTATGAGTTGTGGA AGAATGGAAATGTTCCTAGCTTGATTTGTTCTACGACTTTGGTTGAAGGTTTGAGGAAGTCGGGAAGAACAGAAGAAGCGTATAGATTGATGGAGAAGTT GCCGAAAGAATCTATTGTTCCAGATATTATAACATTTAAATGTCTCCTAGATGTTTGCAAAGCTGGGAGAACAACGGATGTTAACACTCTGAGGCTATTG GGTTCTTCAAGAGGGTTAGAGACAGATAGGACGACTTATGACGTTTTGGTATCCGGATATACAGCACAAGGCAAACGTAAGGAAGGGGAAATCTTGGTGG AAGAGATGTTGGATAAAGATTTTATACCTGATCTTGCTACTTACAACACGTTAATGAACGGGCTGACAAATTCTAGAAGTCAAGCACGGAGGCAGCTGAA TTCGTCTTACAAGTAA
AA sequence Show only first row Show all	>Lus10017041 pacid=23172984 polypeptide=Lus10017041 locus=Lus10017041.g ID=Lus10017041.BGIv1.0 annot-version=v1.0 MARSLANTNRISELTTLLHFIASNPCPCSEGIFCCPRIEPIFQFSVNAYCKAGNLDCGLVDFESMRKLIDGRPSVAVYNALINGFAKYERHDQAVEVYNR LLKDRVTPDVFTFNILINSYCKNSKFEMALELFREMREKGCCPNAVSFNTLIKGFFRQGKLEDGVKMAHEMIDLGIGFSGVTCEILVDGLCNKAEVLKHR GVVPSEFDLYALVASLCEQRHAGRALEVLYELWKNGNVPSLICSTTLVEGLRKSGRTEEAYRLMEKLPKESIVPDIITFKCLLDVCKAGRTTDVNTLRLL GSSRGLETDRTTYDVLVSGYTAQGKRKEGEILVEEMLDKDFIPDLATYNTLMNGLTNSRSQARRQLNSSYK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36240			pentatricopeptide (PPR) repeat...		Lus10017041 [exp]	0	1
					Lus10016908 [exp]	1.0	0.8768
AT5G16690		ORC3, ATORC3	origin recognition complex sub...		Lus10034596 [exp]	2.0	0.8750
AT2G31450		ATNTH1	DNA glycosylase superfamily pr...		Lus10027037 [exp]	5.9	0.8306
AT5G49580			Chaperone DnaJ-domain superfam...		Lus10037801 [exp]	6.3	0.8619
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Lus10035475 [exp]	8.1	0.8177
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10040409 [exp]	8.1	0.8125
AT4G18530			Protein of unknown function (D...		Lus10002991 [exp]	8.5	0.8129
AT5G27270		EMB976	EMBRYO DEFECTIVE 976, Tetratri...		Lus10003465 [exp]	8.7	0.8687
AT2G05250			DNAJ heat shock N-terminal dom...		Lus10001171 [exp]	9.2	0.7982
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10014863 [exp]	11.4	0.8222

Compare expression of checked genes

Lus10017041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.