Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36230 452 / 7e-162 HISN3, APG10 ALBINO AND PALE GREEN 10, Aldolase-type TIM barrel family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021363 [exp] 285 / 4e-98 AT2G36230 251 / 6e-85 ALBINO AND PALE GREEN 10, Aldolase-type TIM barrel family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G090500 [exp] 455 / 2e-162 AT2G36230 443 / 9e-158 ALBINO AND PALE GREEN 10, Aldolase-type TIM barrel family protein (.1) Potri.017G124800 [exp] 451 / 1e-160 AT2G36230 435 / 1e-154 ALBINO AND PALE GREEN 10, Aldolase-type TIM barrel family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF00977 [flax] [poplar] His_biosynth Histidine biosynthesis protein
Representative CDS sequence Show only first row Show all	>Lus10017042 pacid=23173024 polypeptide=Lus10017042 locus=Lus10017042.g ID=Lus10017042.BGIv1.0 annot-version=v1.0 ATGGTGTCAAAGATGCAGCAAAGTTGTTACAGCCTCGTCCTCCACTGGTTCCAGTGTGTCTGTCTGCCCATACTTCCGTTCTTTCCTCACAGACATTGGC CCTTGTCTGTTCAGAGTGCTGTTCGTTTCCGGCCCTGCATTGATATACATAAGGGGAAAGTGAAACAGATTGTTGGTTCTACTCTTCGGGATTCAAATGA GGAGGGTTCAGGTCTGGTGACAAACTTTGAATCCGATATGTCAGCAGCTCAATTTGCAAACTTGTATAAAGGGGATAATCTAACTGGTGGTCATGTCATT ATGCTTGGAGCTGATCCTTTAAGCCAAGCCGCAGCAATTGAGGCATTACATGAATATCCTGGTGGATTGCAAGTTGGAGGTGGTATCAATGCTGAGAATT GCTTAAGTTACATAAACGAAGGAGCTAGCCATGTCATTGTCACCTCATATGTATTTAACAATGGTCAGATGGACTTGCAAAGACTCAAGGATCTTGTCCG TGTTGTTGGAAAGGAGAGGCTGGTATTGGACCTTAGCTGCAGAAAGAAGGATGATAGATACGCAATTGTGACAGATAGGTGGCAGAAATTCAGCGATGTA TATCTTGACGAGAAGATACTGGAATTCCTTGCCAGCTTTGCAGATGAATTTTTGGTTCATGGTGTCGACGTTGAAGGGAAAAAGCTGGGAATTGATGAAG AGCTAGTGCAACTCCTCGGGGAGCACTCACCGATTCCTGTGACTTATGCCGGTGGCGTCACAGTAATGGAGGATTTGGAGAGAATAAAGACAGCCGGGAA AGGACGGGTGGATGTTACAGTTGGTAGTGCTCTTGACATTTTTGGCGGTAACTTACCGTACATAGATGTGATTGCTTGGCATTCCCAGCAAGAAGCCTCA ACAGTTTAA
AA sequence Show only first row Show all	>Lus10017042 pacid=23173024 polypeptide=Lus10017042 locus=Lus10017042.g ID=Lus10017042.BGIv1.0 annot-version=v1.0 MVSKMQQSCYSLVLHWFQCVCLPILPFFPHRHWPLSVQSAVRFRPCIDIHKGKVKQIVGSTLRDSNEEGSGLVTNFESDMSAAQFANLYKGDNLTGGHVI MLGADPLSQAAAIEALHEYPGGLQVGGGINAENCLSYINEGASHVIVTSYVFNNGQMDLQRLKDLVRVVGKERLVLDLSCRKKDDRYAIVTDRWQKFSDV YLDEKILEFLASFADEFLVHGVDVEGKKLGIDEELVQLLGEHSPIPVTYAGGVTVMEDLERIKTAGKGRVDVTVGSALDIFGGNLPYIDVIAWHSQQEAS TV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36230		HISN3, APG10	ALBINO AND PALE GREEN 10, Aldo...		Lus10017042 [exp]	0	1
AT1G69630			F-box/RNI-like superfamily pro...		Lus10024695 [exp]	1.0	0.8722
AT5G19750			Peroxisomal membrane 22 kDa (M...		Lus10012098 [exp]	2.2	0.8565
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10014787 [exp]	2.4	0.8717
AT1G09795		HISN1B, ATATP-P...	ATP phosphoribosyl transferase...		Lus10003685 [exp]	3.5	0.8608
AT5G63310		NDPK1A, NDPKIAI...	NDP KINASE 1A, NUCLEOSIDE DIPH...		Lus10017931 [exp]	4.0	0.8587
AT5G43460			HR-like lesion-inducing protei...		Lus10041152 [exp]	5.3	0.8365
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Lus10021535 [exp]	5.7	0.8128
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Lus10003657 [exp]	6.2	0.7676
AT1G66520		PDE194	pigment defective 194, formylt...		Lus10010978 [exp]	6.3	0.8307
AT3G23020			Tetratricopeptide repeat (TPR)...		Lus10021891 [exp]	7.5	0.7890

Compare expression of checked genes

Lus10017042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.