Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003428 [exp] 569 / 0 ND / Lus10005604 [exp] 484 / 2e-175 ND / Lus10032803 [exp] 469 / 3e-169 ND / Lus10039943 [exp] 409 / 4e-145 ND / Lus10008258 [exp] 397 / 1e-140 ND / Lus10000774 [exp] 380 / 1e-134 ND / Lus10022127 [exp] 374 / 1e-132 ND / Lus10029529 [exp] 368 / 9e-127 ND / Lus10035107 [exp] 321 / 5e-112 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017044 pacid=23172935 polypeptide=Lus10017044 locus=Lus10017044.g ID=Lus10017044.BGIv1.0 annot-version=v1.0 ATGGTTAAGACTATATGCTCTAGAGGAGGGCCATCCGTCCGAGCCTTGAGTCGATTAGTTCGGTCAGCATTTCAACCCGAGTCCGAAGGTTTGAAAGAAC CGAAGGTTGCCGATGCTCCTAAAGGCCGACCGCGTGCGAGGAAGACCGACCGTCGAAATCCATCTTGGCATGAGCATGCTAGTGCACAGTGTACTCCTCC GAAGAGTAGAGGTAGCTCAACTAGATCTACACCTAACTCGAAGGCTACACCTTCCTCGAAGGCTACTACTTCGAAGACGGTTCGTCAGTTTGGGAGGTAC ATACCGGCGGGTATGCACCCGGTACTTGGGGACGTGTTTAACCCACGTGGGGATGGACATTGCGGATTTCGGTGCATTTCATACATAGTATCGGGCGGTG ACGATAGCCAGTATGTGGACATGCGGAGGCGTCTAATGGAACATGTCACAATGAACTGGTATGAACTTTACAGTAATGTCTATTCCACTGACTTAAACGG CGTCATTCACCGGTTGGGTTGGCTATGGGAAACTCCATGTGATGAAGCATGGTGGTTTTGGAATGTGGATCTTTTGGGGTATGCCACCATGTTTAACTGG ACTTTCGTTGTCTTCGGACCCGGACTTCGCGGGGTACCTTATGGGGAGACTTATCTACCGTTGATAGTAGAAGAAGGCACAACGGCACCACTAGGTGTGT CGTATATCGTTTGCACCGGGAATCATTGGGTCGTACTCACGTTGAATGATGCTATTCCGGTGTTACCTATCCCGGCGAAGTCTATGTATTGGAGGTACTG GGCGCAAGACCGCGCCAAACAAATGTGGGAACATGACTTATACCTTGATGAGCATGTAGAGTATGAACAGTTGAGTCAATAG
AA sequence Show only first row Show all	>Lus10017044 pacid=23172935 polypeptide=Lus10017044 locus=Lus10017044.g ID=Lus10017044.BGIv1.0 annot-version=v1.0 MVKTICSRGGPSVRALSRLVRSAFQPESEGLKEPKVADAPKGRPRARKTDRRNPSWHEHASAQCTPPKSRGSSTRSTPNSKATPSSKATTSKTVRQFGRY IPAGMHPVLGDVFNPRGDGHCGFRCISYIVSGGDDSQYVDMRRRLMEHVTMNWYELYSNVYSTDLNGVIHRLGWLWETPCDEAWWFWNVDLLGYATMFNW TFVVFGPGLRGVPYGETYLPLIVEEGTTAPLGVSYIVCTGNHWVVLTLNDAIPVLPIPAKSMYWRYWAQDRAKQMWEHDLYLDEHVEYEQLSQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10017044 [exp]	0	1
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10015284 [exp]	5.6	0.8795
					Lus10003428 [exp]	8.8	0.8496
AT5G42710			unknown protein		Lus10010806 [exp]	15.4	0.8468
AT3G01810			unknown protein		Lus10015805 [exp]	19.0	0.8437
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10012778 [exp]	21.2	0.8410
AT1G29170		ATSCAR3, WAVE2	WASP \(WISKOTT-ALDRICH SYNDROM...		Lus10001897 [exp]	28.8	0.8268
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10022134 [exp]	29.7	0.8026
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Lus10002687 [exp]	30.1	0.8432
					Lus10003285 [exp]	30.3	0.8026
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10033998 [exp]	30.9	0.8101

Compare expression of checked genes

Lus10017044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.