Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26060 460 / 1e-163 EMB1345 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G32990 353 / 8e-122 Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 90 / 3e-20 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 83 / 3e-17 TAF5 TBP-associated factor 5 (.1) AT5G52820 81 / 1e-16 WD-40 repeat family protein / notchless protein, putative (.1) AT5G67320 78 / 1e-15 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT3G49660 75 / 5e-15 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 76 / 7e-15 Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 75 / 1e-14 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT1G52360 74 / 2e-14 Coatomer, beta' subunit (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021365 [exp] 526 / 0 AT2G26060 482 / 2e-172 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10021059 [exp] 97 / 5e-22 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 96 / 1e-21 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10024447 [exp] 93 / 2e-20 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10014674 [exp] 86 / 5e-19 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 85 / 2e-18 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033092 [exp] 84 / 2e-17 AT1G52360 1481 / 0.0 Coatomer, beta' subunit (.1.2) Lus10002324 [exp] 82 / 3e-17 AT3G15980 397 / 7e-132 Coatomer, beta' subunit (.1.2.3.4.5) Lus10026094 [exp] 81 / 4e-17 AT3G15980 406 / 1e-135 Coatomer, beta' subunit (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G212800 [exp] 511 / 0 AT2G26060 530 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G221000 [exp] 507 / 0 AT2G26060 523 / 0.0 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.014G136700 [exp] 169 / 4e-52 AT2G26060 156 / 2e-47 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G221150 [exp] 94 / 9e-24 AT2G26060 124 / 1e-35 embryo defective 1345, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.018G020200 [exp] 86 / 3e-18 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.005G148500 [exp] 82 / 1e-17 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 81 / 4e-17 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 81 / 5e-17 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 81 / 1e-16 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.005G144400 [exp] 78 / 1e-15 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10017045 pacid=23172963 polypeptide=Lus10017045 locus=Lus10017045.g ID=Lus10017045.BGIv1.0 annot-version=v1.0 ATGGACTTGCTCGATGACGGCGGCGGCAACTTGGAGCTCAAGGAGATTCAGACGCTCCGCGGTCATACCGATAGGGTTTGGAGCCTGGCGTGGAATCCGG CCACCAGAACTGGTGACACCCAGCCAATCATTGCTTCCTGCAGCGGCGATAAGACTGTTCGAATCTGGGAACGTAGTGCCTTGACCCGTGCTTGGGACTG CAAGGCAGTTTTAGAAGAAACTCATACCAGGACTGTTCGGTCGTGCGCCTGGTCACCGTCTGGGAAATTATTGGCTACTGCCAGCTTTGATGCTACCACT GCCATTTGGGAGAATGTTGCGGGTGATTTTCAATGTGTTTCCACGTTAGAGGGTCATGAAAATGAAGTCAAGAGCGTGTCATGGAATGCATCTGAGTCTC TCTTGGCAACTTGTAGTCGAGACAAAACTGTTTGGATTTGGGAAGTGATGCCTGGGAATGAATACGAATGTGCTTCAGTATTGCAGGGCCACACACAAGA TGTTAAGATGGTTAAGTGGCATCCAACCATGGACATATTGTTTTCCTGTAGCTATGATAATACCATTAAGGTCTGGGCTGAGGATGGTACTGGTGATTGG GACTGCATTCAAACGATAGATGAATCTAACAATGGCCACTCTTCTACTGTTTGGGCCATTTCTTTCAATGCCGAAGGAGACAAAATGGTTACATGTAGGA AACATCTTTGCACTCTATCGGGATATCATGATCGCACCATACTTTCAGTTGACTGGTCAAGGGAAGGTATTATAGCCAGTGGAGCAGCAGATGATGCTAT ACGGCTTTTTGCTGAAACCAAAGACAGTGCGGTTGGCGGCTCCTCTTATAGCCTGCTGTTGAAAAAGGAAAAAGCCCACGATATGGACGTAAACGTAGTG CAATGGAGCCCTGCGGAAAATAGGCTGATGGCTTCTGCTAGTGATGATGGAACAATTAAGATATGGGAATTGGCAACTCGCACCTGA
AA sequence Show only first row Show all	>Lus10017045 pacid=23172963 polypeptide=Lus10017045 locus=Lus10017045.g ID=Lus10017045.BGIv1.0 annot-version=v1.0 MDLLDDGGGNLELKEIQTLRGHTDRVWSLAWNPATRTGDTQPIIASCSGDKTVRIWERSALTRAWDCKAVLEETHTRTVRSCAWSPSGKLLATASFDATT AIWENVAGDFQCVSTLEGHENEVKSVSWNASESLLATCSRDKTVWIWEVMPGNEYECASVLQGHTQDVKMVKWHPTMDILFSCSYDNTIKVWAEDGTGDW DCIQTIDESNNGHSSTVWAISFNAEGDKMVTCRKHLCTLSGYHDRTILSVDWSREGIIASGAADDAIRLFAETKDSAVGGSSYSLLLKKEKAHDMDVNVV QWSPAENRLMASASDDGTIKIWELATRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26060		EMB1345	embryo defective 1345, Transdu...		Lus10017045 [exp]	0	1
AT2G26060		EMB1345	embryo defective 1345, Transdu...		Lus10021365 [exp]	1.0	0.9810
AT5G39890			Protein of unknown function (D...		Lus10015360 [exp]	1.4	0.9709
AT5G39890			Protein of unknown function (D...		Lus10013620 [exp]	6.6	0.9526
AT2G44990		MAX3, CCD7, ATC...	carotenoid cleavage dioxygenas...		Lus10021241 [exp]	6.7	0.9592
AT4G10270			Wound-responsive family protei...		Lus10018530 [exp]	6.9	0.9610
AT5G08570			Pyruvate kinase family protein...		Lus10041003 [exp]	7.7	0.9532
AT1G74940			Protein of unknown function (D...		Lus10011923 [exp]	8.4	0.9469
AT5G44730			Haloacid dehalogenase-like hyd...		Lus10015451 [exp]	8.5	0.9533
AT5G27430			Signal peptidase subunit (.1)		Lus10004463 [exp]	9.0	0.9312
AT5G39890			Protein of unknown function (D...		Lus10003861 [exp]	10.8	0.9609

Compare expression of checked genes

Lus10017045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.