Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52740 89 / 4e-23 unknown protein AT3G44450 67 / 1e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021366 [exp] 192 / 4e-63 AT3G52740 91 / 1e-23 unknown protein Lus10014197 [exp] 93 / 5e-24 AT3G52740 87 / 2e-22 unknown protein Lus10022717 [exp] 87 / 5e-22 AT3G52740 76 / 3e-18 unknown protein Lus10004872 [exp] 74 / 2e-17 AT3G52740 102 / 6e-29 unknown protein Lus10020614 [exp] 67 / 2e-14 AT3G52740 103 / 2e-29 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G164000 [exp] 82 / 3e-20 AT3G52740 95 / 2e-25 unknown protein Potri.009G163900 [exp] 81 / 3e-20 AT3G52740 101 / 7e-29 unknown protein Potri.004G202900 [exp] 79 / 3e-19 AT3G52740 100 / 1e-27 unknown protein Potri.004G203000 [exp] 77 / 4e-18 AT3G52740 90 / 1e-23 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017046 pacid=23172946 polypeptide=Lus10017046 locus=Lus10017046.g ID=Lus10017046.BGIv1.0 annot-version=v1.0 ATGAAACCTGTTGAAGAACCTTTGTCATCTAGTCCTTACGAACCAGAGGATGATCACGAAGAGCAGACAGAGGATAGTCATCGCATAAAGTCAAGTCCTT TCTCCTCCTCATTAGACGACAAAGAAGCAGCAGCGACATCAGTACAGCAGCAAGATGCTAGCTTTGATGGCTGCCAAGAAGAAGAAGAAGTGGTGGAGGA ATCTACAGAGTCAGCAGAAACAACGCTACCATTGCAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAAAGAGATGAAGATTCATGCGTGCGAGAGAAGATA AAGAGGCACAGGACAGAGGTAGCCGGAAGGGTTTGGATCCCAGAGATATGGGGGCAGGAAGAACTACTCAAGGATTGGACTGACTGTTCTGCTTTCGATG CTGCTCTACGCTCTAACGGCATAATGTCTGCCCGTGATGCTCTGGCTCGCCAAGGCTTGACGACTCACGATACCATGGGACTCGGTACCGTTGGAAACAG GTGTTGA
AA sequence Show only first row Show all	>Lus10017046 pacid=23172946 polypeptide=Lus10017046 locus=Lus10017046.g ID=Lus10017046.BGIv1.0 annot-version=v1.0 MKPVEEPLSSSPYEPEDDHEEQTEDSHRIKSSPFSSSLDDKEAAATSVQQQDASFDGCQEEEEVVEESTESAETTLPLQKEEEEEEEEERDEDSCVREKI KRHRTEVAGRVWIPEIWGQEELLKDWTDCSAFDAALRSNGIMSARDALARQGLTTHDTMGLGTVGNRC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52740			unknown protein		Lus10017046 [exp]	0	1
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Lus10038823 [exp]	1.4	0.9627
AT3G52740			unknown protein		Lus10021366 [exp]	2.0	0.9483
AT3G16180			Major facilitator superfamily ...		Lus10023663 [exp]	2.2	0.9276
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10030141 [exp]	3.5	0.9451
AT3G10420		SPD1	SEEDLING PLASTID DEVELOPMENT 1...		Lus10017471 [exp]	4.0	0.9343
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Lus10005798 [exp]	7.5	0.9176
					Lus10017075 [exp]	7.7	0.9112
AT5G55570			unknown protein		Lus10008950 [exp]	8.1	0.9249
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Lus10006620 [exp]	8.4	0.8944
AT3G47070			unknown protein		Lus10018216 [exp]	8.5	0.9147

Compare expression of checked genes

Lus10017046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.