Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16710 180 / 4e-59 Iron-sulphur cluster biosynthesis family protein (.1.2.3) AT2G36260 145 / 7e-46 Iron-sulphur cluster biosynthesis family protein (.1) AT1G10500 57 / 1e-10 ATCPISCA chloroplast-localized ISCA-like protein (.1) AT5G03905 41 / 0.0001 Iron-sulphur cluster biosynthesis family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021368 [exp] 130 / 2e-37 AT2G16710 211 / 3e-69 Iron-sulphur cluster biosynthesis family protein (.1.2.3) Lus10012683 [exp] 58 / 6e-11 AT1G10500 218 / 2e-73 chloroplast-localized ISCA-like protein (.1) Lus10020827 [exp] 58 / 7e-11 AT1G10500 216 / 1e-72 chloroplast-localized ISCA-like protein (.1) Lus10014201 [exp] 47 / 7e-07 AT5G03905 204 / 2e-68 Iron-sulphur cluster biosynthesis family protein (.1) Lus10022714 [exp] 46 / 2e-06 AT5G03905 201 / 3e-67 Iron-sulphur cluster biosynthesis family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G238800 [exp] 180 / 4e-59 AT2G16710 211 / 2e-71 Iron-sulphur cluster biosynthesis family protein (.1.2.3) Potri.008G020400 [exp] 178 / 2e-58 AT2G16710 197 / 5e-66 Iron-sulphur cluster biosynthesis family protein (.1.2.3) Potri.005G085400 [exp] 59 / 3e-11 AT1G10500 227 / 9e-77 chloroplast-localized ISCA-like protein (.1) Potri.007G079600 [exp] 57 / 1e-10 AT1G10500 210 / 5e-70 chloroplast-localized ISCA-like protein (.1) Potri.006G084300 [exp] 44 / 5e-06 AT5G03905 199 / 2e-66 Iron-sulphur cluster biosynthesis family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01521 [flax] [poplar] Fe-S_biosyn Iron-sulphur cluster biosynthesis
Representative CDS sequence Show only first row Show all	>Lus10017048 pacid=23173017 polypeptide=Lus10017048 locus=Lus10017048.g ID=Lus10017048.BGIv1.0 annot-version=v1.0 ATGGCTTCTAAATTAGCAGCAGCTGCGCAGAAGATCGCCCCCGCCATGAGGCGGCAGGCTTTAGCGTTAACCGACGCGGCTGCGTCCAGAGTCCGCCATC TCTTACAGCAACGCCAGAGGCCTTTCCTCCGCCTCGGCGTCAAGGCTCGCGGTTGCAATGGCTTGTCTTACACCCTCAATTACGCAGATGAGAAGGGGAA ATTTGATGAACTGGTTGAAGAGAAGGGTGTGAAGGTACTAATTGATCCGAAAGCTCTCATGCACGTTATTGGAACCAAGATGGACTTTGTTGACGACAAA CTCAGGTACGCAGCACCCTTGTATGGTAACTTCCCTGTTGCTCGAAGTAAATATGGATTTCAGGTTGTAGGTGGATGCAATTGGTCTGAGTTCGTATTTA TAAACCCAAACTCTGAAGGGCAGTGCGGTTGTGGTGAATCTTTCATGACTACGTCAACAAGCAGTACTGCTAAACAAGGCAGCAGCAGATGA
AA sequence Show only first row Show all	>Lus10017048 pacid=23173017 polypeptide=Lus10017048 locus=Lus10017048.g ID=Lus10017048.BGIv1.0 annot-version=v1.0 MASKLAAAAQKIAPAMRRQALALTDAAASRVRHLLQQRQRPFLRLGVKARGCNGLSYTLNYADEKGKFDELVEEKGVKVLIDPKALMHVIGTKMDFVDDK LRYAAPLYGNFPVARSKYGFQVVGGCNWSEFVFINPNSEGQCGCGESFMTTSTSSTAKQGSSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16710			Iron-sulphur cluster biosynthe...		Lus10017048 [exp]	0	1
AT5G19875			unknown protein		Lus10024507 [exp]	4.6	0.7645
AT1G24440			RING/U-box superfamily protein...		Lus10006448 [exp]	8.9	0.7362
AT2G28085			SAUR-like auxin-responsive pro...		Lus10001397 [exp]	9.3	0.8034
AT1G56423			unknown protein		Lus10020695 [exp]	56.2	0.7494
AT3G14880			unknown protein		Lus10026217 [exp]	59.0	0.6790
AT3G15780			unknown protein		Lus10011492 [exp]	63.0	0.7389
					Lus10033100 [exp]	71.3	0.6825
					Lus10007207 [exp]	90.6	0.7189
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Lus10022407 [exp]	95.9	0.7243
AT1G26580			unknown protein		Lus10004658 [exp]	108.9	0.6640

Compare expression of checked genes

Lus10017048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.