Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36270 184 / 1e-53 bZIP EEL, GIA1, ABI5 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G44460 179 / 5e-53 bZIP DPBF2, ATBZIP67 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G56850 153 / 2e-43 bZIP DPBF3, AREB3 ABA-responsive element binding protein 3 (.1) AT2G41070 127 / 6e-34 bZIP DPBF4, ATBZIP12, EEL ENHANCED EM LEVEL, Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT1G49720 115 / 1e-28 bZIP ABF1 abscisic acid responsive element-binding factor 1 (.1.2) AT3G19290 115 / 3e-28 bZIP AREB2, ABF4 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) AT4G34000 105 / 6e-25 bZIP AtABF3, ABF3, DPBF5 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) AT1G45249 100 / 7e-23 bZIP AtABF2, ATAREB1, AREB1, ABF2 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) AT5G44080 84 / 6e-18 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT5G42910 73 / 5e-14 bZIP Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021369 [exp] 611 / 0 AT2G36270 322 / 2e-107 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10022720 [exp] 340 / 6e-115 AT2G36270 312 / 2e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10014194 [exp] 195 / 3e-58 AT2G36270 342 / 2e-114 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10028889 [exp] 155 / 4e-44 AT3G56850 273 / 7e-91 ABA-responsive element binding protein 3 (.1) Lus10008929 [exp] 127 / 1e-33 AT3G56850 214 / 3e-68 ABA-responsive element binding protein 3 (.1) Lus10008928 [exp] 105 / 1e-26 AT3G56850 137 / 4e-40 ABA-responsive element binding protein 3 (.1) Lus10014066 [exp] 103 / 6e-24 AT3G19290 345 / 1e-115 ABA-RESPONSIVE ELEMENT BINDING PROTEIN 2, ABRE binding factor 4 (.1.2.3) Lus10009755 [exp] 97 / 1e-21 AT1G45249 283 / 3e-91 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Lus10006489 [exp] 96 / 2e-21 AT1G45249 297 / 1e-97 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G083000 [exp] 200 / 4e-60 AT2G36270 313 / 1e-103 GROWTH-INSENSITIVITY TO ABA 1, ABA INSENSITIVE 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.002G125400 [exp] 113 / 2e-27 AT1G45249 306 / 4e-100 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.014G028200 [exp] 112 / 3e-27 AT1G45249 317 / 2e-105 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3) Potri.001G220700 [exp] 105 / 4e-26 AT3G56850 152 / 2e-44 ABA-responsive element binding protein 3 (.1) Potri.009G101200 [exp] 105 / 1e-24 AT4G34000 358 / 2e-120 DC3 PROMOTER-BINDING FACTOR 5, abscisic acid responsive elements-binding factor 3 (.1.2.3) Potri.010G248100 [exp] 102 / 3e-24 AT3G56850 243 / 2e-79 ABA-responsive element binding protein 3 (.1) Potri.010G248300 [exp] 101 / 5e-24 AT3G56850 216 / 9e-69 ABA-responsive element binding protein 3 (.1) Potri.016G024000 [exp] 100 / 6e-24 AT3G56850 241 / 4e-79 ABA-responsive element binding protein 3 (.1) Potri.009G164500 [exp] 100 / 1e-23 AT3G44460 160 / 2e-46 basic leucine zipper transcription factor 67, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.006G025800 [exp] 97 / 1e-22 AT3G56850 271 / 7e-91 ABA-responsive element binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10017049 pacid=23172997 polypeptide=Lus10017049 locus=Lus10017049.g ID=Lus10017049.BGIv1.0 annot-version=v1.0 ATGGTGGCAACGCGCCCTGATCAAGACATGAATTCACAAGGGGAGGTGGATTCGCCATTGCAGCAGCTCAATCACCAATCCAATAAGAACCAACCATCCA CCACCCCACTGGGAAGGCAGTCCTCAATTTACTCCCTCACGCTCGATGAATTCCAGCACACCCTCTGCGAAGGCGGAAAGAATTTCGGTTCAATGAACAT GGACGAGTTCATCAACAGCATTTGGACCGCCGAGGAAAACCAGGGCGCCGCGGCACACACTTCCAATTCAGCCACTGCCGTTGCTAACAATCATTCCGGT CGAGACACTACCACCAATTCTGCCGGTTTGGGAATCTCCAAGCAGCCGAGCCTGCCACGGCAGGGGTCGCTGACCCTGCCCGAGAAGCTATGCCGAAAGA CGGTGGACGAGGTGTGGTCGGAGATTCACAATGGCAGAGGGAGCAGATCAGGGCAGCGAAAGGGCAGCGAGGGAACAACGAATTCCGGAGCTGACATGCA GAATGCCGGTTCTGTCCCTCGGCAGCCGACGTTTGGGGAGATGACGCTTGAGGATTTTCTTGTCAAGGCAGGGGTAGTTAGGGGACAACAGCAACAAGGT GGCGGTGGATCCTCCGTTGCGGCCGCATCGATTCCGCCTGCACCTCAGCAGTACAGCAGCATGTACCAGAACCCCGTTGCTGCTTACCAGTCAATTCTTC CCCACGTGCAGCCAGGTGATGTTTATGGCGGTGTCGGGGCAGGATATGCTATGGTGAGGCCTAATAGTCCGGTGTCGTCAGATGGGATGTTGGGGAATAT GGATGGTGTAGGGAATCAGTATGGGATGGATATAGGTGGGCTGAGGGGGCGTAAGAGGGTGATCGATGGGCCGGTGGAGAAGGTCGTGGAGCGAAGGCAG AGACGGATGATCAAGAATCGAGAGTCTGCTGCCAGGTCTCGAGCAAGGAAGCAGGCGTACACAGTTGAACTAGAAGCAGAACTGAACCAGTTGAAAGAAG AGAACAACCAACTCAAGCAGGCACTGGTTGAGCTGGAAAGGAAGCGAAAGCAGAAGGTAGCAGTTTCGAAAGCGAACCTACCTGGCTTGAATTCTAAGAA TGTTGAGGAAGCGAGAACACGGGGACAGTCGAAGGCGCAGAAGGCGAGGGAGAATCTGAGGCTGATGAGAAGGAACTTGAGCTGTCCATTATGA
AA sequence Show only first row Show all	>Lus10017049 pacid=23172997 polypeptide=Lus10017049 locus=Lus10017049.g ID=Lus10017049.BGIv1.0 annot-version=v1.0 MVATRPDQDMNSQGEVDSPLQQLNHQSNKNQPSTTPLGRQSSIYSLTLDEFQHTLCEGGKNFGSMNMDEFINSIWTAEENQGAAAHTSNSATAVANNHSG RDTTTNSAGLGISKQPSLPRQGSLTLPEKLCRKTVDEVWSEIHNGRGSRSGQRKGSEGTTNSGADMQNAGSVPRQPTFGEMTLEDFLVKAGVVRGQQQQG GGGSSVAAASIPPAPQQYSSMYQNPVAAYQSILPHVQPGDVYGGVGAGYAMVRPNSPVSSDGMLGNMDGVGNQYGMDIGGLRGRKRVIDGPVEKVVERRQ RRMIKNRESAARSRARKQAYTVELEAELNQLKEENNQLKQALVELERKRKQKVAVSKANLPGLNSKNVEEARTRGQSKAQKARENLRLMRRNLSCPL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10017049 [exp]	0	1
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10013614 [exp]	4.0	0.9213
AT5G47840		AMK2	adenosine monophosphate kinase...		Lus10037995 [exp]	5.2	0.8689
AT1G68910		WIT2	WPP domain-interacting protein...		Lus10029109 [exp]	5.3	0.8820
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10040881 [exp]	11.9	0.9381
AT2G15580			RING/U-box superfamily protein...		Lus10030120 [exp]	18.0	0.9317
AT2G36270	bZIP	EEL, GIA1, ABI5	GROWTH-INSENSITIVITY TO ABA 1,...		Lus10021369 [exp]	22.0	0.9251
AT1G60010			unknown protein		Lus10010708 [exp]	25.8	0.8775
AT2G17650			AMP-dependent synthetase and l...		Lus10041826 [exp]	26.5	0.8756
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10020469 [exp]	31.1	0.9093
AT4G25330			unknown protein		Lus10006358 [exp]	36.2	0.8520

Compare expression of checked genes

Lus10017049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.