Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48410 474 / 5e-168 alpha/beta-Hydrolases superfamily protein (.1) AT2G36290 466 / 4e-165 alpha/beta-Hydrolases superfamily protein (.1) AT1G74300 438 / 3e-154 alpha/beta-Hydrolases superfamily protein (.1) AT1G74280 418 / 4e-146 alpha/beta-Hydrolases superfamily protein (.1) AT3G54240 407 / 5e-142 alpha/beta-Hydrolases superfamily protein (.1) AT1G74290 399 / 2e-138 alpha/beta-Hydrolases superfamily protein (.1) AT5G22460 357 / 3e-122 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G44510 276 / 5e-91 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G03240 272 / 3e-89 alpha/beta-Hydrolases superfamily protein (.1) AT3G03230 264 / 5e-86 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021371 [exp] 708 / 0 AT3G48410 473 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10022722 [exp] 570 / 0 AT3G48410 429 / 4e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10014191 [exp] 533 / 0 AT3G48410 412 / 3e-143 alpha/beta-Hydrolases superfamily protein (.1) Lus10041666 [exp] 441 / 2e-153 AT2G36290 440 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10028860 [exp] 434 / 2e-152 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10018549 [exp] 433 / 3e-152 AT2G36290 434 / 8e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10034148 [exp] 428 / 5e-150 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10043437 [exp] 426 / 2e-149 AT2G36290 429 / 5e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10008968 [exp] 425 / 1e-148 AT2G36290 442 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G237700 [exp] 467 / 9e-166 AT2G36290 452 / 6e-160 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021400 [exp] 461 / 2e-163 AT2G36290 446 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237800 [exp] 449 / 1e-158 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021000 [exp] 449 / 4e-158 AT2G36290 441 / 5e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021200 [exp] 443 / 2e-156 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G164900 [exp] 389 / 5e-135 AT5G22460 374 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G203700 [exp] 370 / 2e-127 AT5G22460 434 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G164600 [exp] 313 / 2e-105 AT3G44510 440 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G131300 [exp] 144 / 3e-38 AT5G02970 658 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G086200 [exp] 135 / 2e-35 AT5G02970 653 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10017051 pacid=23172981 polypeptide=Lus10017051 locus=Lus10017051.g ID=Lus10017051.BGIv1.0 annot-version=v1.0 ATGGCGGCGGGAGTGAGCAGGAAGATATCTGCAGCCTCCGCAAGGTCTCACACTAGAGCTAGAAGAGCTAAGCAGACCGCCGTTCCTACTCTTCCTTCAG GTATCTTTCCTACAGTGCTTGTGATCTTGCTCGTTGGGGTGTTGGCTTGGGGTTATCAATCCATCCAACCACCTCCATCCAAGATATGCGGTTCACCTGG CGGACCACTCGTAACTGCACCAAGAATCAAGCTTCGGGACGGGAGGCATTTGGCTTATCGAGAACATGGCGTACCAAAGGATGATGCCAAGATCAAAATT GTCTTTCTCCATGGTTTTGATGTTTGCAGGCTTGATGATGTGATTGCTAACTACACCTCTCCGGAACTCATCAATGAGCTAGGGATCTATTTTGTGTCAT ATGACAGACCTGGTTACGGAGAGAGCGATCCTGATCCATCGAGATCAGTGAAAAGCCAGGCTTTGGACGTGGAAGAGCTTGCTGATCAATTAGGACTAGG GTCTAAGTTCTATCTTATCGGTTATTCACTTGGTGGTCAGTTGACATGGGGCTGCCTAAAGTACATCCCTCACAGGCTAGCAGGTGTGACTCTGTTGACC CCAGCTACCAACTACTGGTGGCCTGGTTTTCCATCCAACTTATCTAGTGAAGCTTTGAGCAAACAGGCACCTTCTGACTATTGGTCGCTTCATGTGGCTC ATTATGCTCCCTGGTTAACTCACTGGTGGAATACCCAGAAATGGTTCCCAGTTTTTGGAGTCATCAGTAAAAGCCCTCATATTTGTTCCCGCCAAGACAA GGAAATTGTTGATCAGCTTGTAGCTAAAGGAAATAATAACTTGGTACATACACGGCAGCAAGGAGAGTACGAGTCAATCCATCGCGACATGAACATAGGA TTCGGCACCTGGGAGTTCGATCCTATGGATCTTGAGAACCCGTTTCCAAACAATGAGACCCATGTTCATATGTGGCAAGGAGATGAAGACTATCTAGTTC CAGCTACACTTCAGCGCTACATCGCAGAGCGGCTTCCCTGGATTAGCTACCATGAGCTGGCAGGTTCTGGACATTTCTTCCCTTATCTTGATGGAATGGC CGACACCATTGTCAAGACTATGCTAGCTGGCAAGTTTTGA
AA sequence Show only first row Show all	>Lus10017051 pacid=23172981 polypeptide=Lus10017051 locus=Lus10017051.g ID=Lus10017051.BGIv1.0 annot-version=v1.0 MAAGVSRKISAASARSHTRARRAKQTAVPTLPSGIFPTVLVILLVGVLAWGYQSIQPPPSKICGSPGGPLVTAPRIKLRDGRHLAYREHGVPKDDAKIKI VFLHGFDVCRLDDVIANYTSPELINELGIYFVSYDRPGYGESDPDPSRSVKSQALDVEELADQLGLGSKFYLIGYSLGGQLTWGCLKYIPHRLAGVTLLT PATNYWWPGFPSNLSSEALSKQAPSDYWSLHVAHYAPWLTHWWNTQKWFPVFGVISKSPHICSRQDKEIVDQLVAKGNNNLVHTRQQGEYESIHRDMNIG FGTWEFDPMDLENPFPNNETHVHMWQGDEDYLVPATLQRYIAERLPWISYHELAGSGHFFPYLDGMADTIVKTMLAGKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10017051 [exp]	0	1
AT4G22840			Sodium Bile acid symporter fam...		Lus10008914 [exp]	1.4	0.7975
AT2G26790			Pentatricopeptide repeat (PPR)...		Lus10020298 [exp]	3.2	0.7596
AT1G68220			Protein of unknown function (D...		Lus10043484 [exp]	3.5	0.8146
AT3G06330			RING/U-box superfamily protein...		Lus10033985 [exp]	8.0	0.7790
AT5G38050			RNA polymerase II transcriptio...		Lus10009106 [exp]	10.6	0.7331
AT1G02290			unknown protein		Lus10018907 [exp]	11.2	0.7757
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10004561 [exp]	12.3	0.7633
AT4G28440			Nucleic acid-binding, OB-fold-...		Lus10013989 [exp]	12.4	0.7820
AT4G17250			unknown protein		Lus10004355 [exp]	13.3	0.7194
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Lus10037678 [exp]	14.7	0.7696

Compare expression of checked genes

Lus10017051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.