Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52760 286 / 6e-97 Integral membrane Yip1 family protein (.1) AT2G36300 284 / 6e-96 Integral membrane Yip1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021374 [exp] 332 / 7e-115 AT2G36300 380 / 5e-135 Integral membrane Yip1 family protein (.1) Lus10022723 [exp] 311 / 6e-107 AT3G52760 346 / 8e-122 Integral membrane Yip1 family protein (.1) Lus10014191 [exp] 83 / 9e-18 AT3G48410 412 / 3e-143 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G152600 [exp] 298 / 8e-102 AT2G36300 365 / 6e-129 Integral membrane Yip1 family protein (.1) Potri.004G190800 [exp] 298 / 2e-101 AT2G36300 367 / 8e-130 Integral membrane Yip1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0112 [flax] [poplar] Yip1 PF04893 [flax] [poplar] Yip1 Yip1 domain
Representative CDS sequence Show only first row Show all	>Lus10017054 pacid=23173036 polypeptide=Lus10017054 locus=Lus10017054.g ID=Lus10017054.BGIv1.0 annot-version=v1.0 ATGTCGAATTTGTTTTCGGATACCCTGCCATATTATTCTGCTGCTGCACCATTCTTTAAGCCCGGTGATGGTGGAGTAGCTGACGGCCGGTGGATAAATG TCGTCTGCATTTCTGAATTTGTTGGAGAACACAAAGAAGAACAGAACGGTGGCAATGAGAACGACAATACCCAGTTATGGCGAGGGAATTCAGCGTGCCG CCCGTCGTATTTCCATCCGGCACCAATCCCAGCGTCGCCGGTGGAGCCAACATGCAGCAAAGGCGGGTCCCGTCGGCGCCGTTCCAGCCTCCTCGCCCTT CCAACTCAGGAATCCCTTTCATGTCCTTCGACATGGGATCCGCTCCCGCTGGCCTTCGGCGGGGGCACAATCGGCGGAGGTCCCACTCCCTCCAGCGGTT GTAATTTCGACGACGAAGAGCCTCTCCTCGACGAACTCGGCATCCACCCGGACCAAATCTGGCGGAAGACGAAGTCGATCCTGAATCCTTTCCGCGTCAA CTCCGATGTTCACAAGGACTCCGATCTATCCGGCCCGATCTTCTTGTACCTGTCGCTCTGCCTCTTTCAGTTGCTCGCTGGTAAGATCCAATTTGGTGTG ATTCTAGGGTGGATCGTTGTGTCCTCGATTTTCTTGTACGTCGTGTTCAACATGCTCGCTGGGAGGAACGGGAACTTGGATCTCCACACTTGTACGGGCG TGGTTGGGTACTGTTTGCTCCCGGTGGTTATCCTATCGGCGATTTCTCTGTTCTTGCCTCAGGGCGCGCCTATCAGGTTCGCTTTCTCCGGTGTCTTCGT GATTTGGGCGACTAGGGCATGCACTAATCTGATGGTGGCAGCTGCCGACGGCGGAGAGGAACACCGTGGATTGATCGCGTACGCTTGTTTCTTGATTTAC TCGTTGTTCTCATTGCTTGTGATATTTTAG
AA sequence Show only first row Show all	>Lus10017054 pacid=23173036 polypeptide=Lus10017054 locus=Lus10017054.g ID=Lus10017054.BGIv1.0 annot-version=v1.0 MSNLFSDTLPYYSAAAPFFKPGDGGVADGRWINVVCISEFVGEHKEEQNGGNENDNTQLWRGNSACRPSYFHPAPIPASPVEPTCSKGGSRRRRSSLLAL PTQESLSCPSTWDPLPLAFGGGTIGGGPTPSSGCNFDDEEPLLDELGIHPDQIWRKTKSILNPFRVNSDVHKDSDLSGPIFLYLSLCLFQLLAGKIQFGV ILGWIVVSSIFLYVVFNMLAGRNGNLDLHTCTGVVGYCLLPVVILSAISLFLPQGAPIRFAFSGVFVIWATRACTNLMVAAADGGEEHRGLIAYACFLIY SLFSLLVIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52760			Integral membrane Yip1 family ...		Lus10017054 [exp]	0	1
AT2G36300			Integral membrane Yip1 family ...		Lus10021374 [exp]	1.0	0.9634
AT5G03080			Phosphatidic acid phosphatase ...		Lus10019919 [exp]	1.4	0.9619
AT5G12890			UDP-Glycosyltransferase superf...		Lus10031248 [exp]	1.7	0.9574
AT5G67540			Arabinanase/levansucrase/inver...		Lus10011543 [exp]	3.7	0.9296
AT2G25430			epsin N-terminal homology (ENT...		Lus10002920 [exp]	4.6	0.9377
AT2G25680		MOT1	molybdate transporter 1 (.1)		Lus10016331 [exp]	4.9	0.9387
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10026084 [exp]	7.1	0.9179
AT1G44960			SNARE associated Golgi protein...		Lus10006050 [exp]	9.6	0.8910
AT4G08810		SUB1	calcium ion binding (.1)		Lus10039175 [exp]	10.6	0.9373
					Lus10006401 [exp]	10.9	0.9272

Compare expression of checked genes

Lus10017054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.