Plant FIBer expression Database

Lus10017055 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G52770 51 / 4e-10 ZPR3 LITTLE ZIPPER 3, protein binding (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021375
[exp]
110 / 4e-33 AT3G52770 77 / 3e-20 LITTLE ZIPPER 3, protein binding (.1)
Lus10022725
[exp]
48 / 2e-08 AT3G52770 73 / 5e-19 LITTLE ZIPPER 3, protein binding (.1)
Lus10014188
[exp]
47 / 4e-08 AT3G52770 72 / 1e-18 LITTLE ZIPPER 3, protein binding (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G083201
[exp]
75 / 3e-18 AT3G52770 54 / 2e-10 LITTLE ZIPPER 3, protein binding (.1)
Potri.010G237600
[exp]
53 / 8e-11 AT3G52770 49 / 7e-10 LITTLE ZIPPER 3, protein binding (.1)
Potri.008G021766
[exp]
43 / 5e-07 AT3G52770 51 / 1e-10 LITTLE ZIPPER 3, protein binding (.1)
PFAM info
Representative CDS sequence
>Lus10017055 pacid=23172999 polypeptide=Lus10017055 locus=Lus10017055.g ID=Lus10017055.BGIv1.0 annot-version=v1.0
ATGGCATTGCAACATTGTCTCCATCTGAATGCAGGTCTCAATATTCTAAAGGCAATGGAGAGACTGAACTCAAAGCTGTACCTGCAAAACTGCTTCATAA
TGAAAGAAAATGAGAGGCTGCGGAAGAAAGCACAACTTCTCAACCAGGAGAATCAAGCATTGCTCTCTGAACTCAAACAGAAGCTCTCCAAGGGAAATGC
AAAAGGGAAATCTTCTCCTAACAGCAGTACTATTCCTGACCTCAACCTGGGTGGTTCAAGCTCCTCCCAGAATCATGCCAACTCCAACAGTAACTGA
AA sequence
>Lus10017055 pacid=23172999 polypeptide=Lus10017055 locus=Lus10017055.g ID=Lus10017055.BGIv1.0 annot-version=v1.0
MALQHCLHLNAGLNILKAMERLNSKLYLQNCFIMKENERLRKKAQLLNQENQALLSELKQKLSKGNAKGKSSPNSSTIPDLNLGGSSSSQNHANSNSN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G52770 ZPR3 LITTLE ZIPPER 3, protein bindi... Lus10017055
[exp]
0 1
AT4G04480 unknown protein Lus10015548
[exp]
3.0 0.7838
Lus10043163
[exp]
5.5 0.7750
AT3G52770 ZPR3 LITTLE ZIPPER 3, protein bindi... Lus10021375
[exp]
6.5 0.8068
AT4G29100 bHLH bHLH068 basic helix-loop-helix (bHLH) ... Lus10034940
[exp]
8.4 0.8013
AT5G55640 unknown protein Lus10043162
[exp]
9.8 0.7618
AT1G07980 CCAAT NF-YC10 "nuclear factor Y, subunit C10... Lus10036110
[exp]
12.4 0.7266
AT2G37210 LOG3 LONELY GUY 3, lysine decarboxy... Lus10002226
[exp]
13.3 0.7401
AT2G36410 Family of unknown function (DU... Lus10014379
[exp]
17.5 0.7580
AT4G02590 bHLH bHLH059, UNE12 unfertilized embryo sac 12, ba... Lus10002720
[exp]
23.9 0.7064
AT1G28220 ATPUP3 purine permease 3 (.1) Lus10036465
[exp]
24.2 0.7668

Lus10017055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.