Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52780 555 / 0 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT3G52820 483 / 1e-169 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G20500 476 / 8e-167 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT3G52810 432 / 1e-149 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT5G34850 310 / 2e-101 ATPAP26, PAP26 purple acid phosphatase 26 (.1) AT3G07130 298 / 1e-95 ATPAP15, PAP15 purple acid phosphatase 15 (.1) AT1G56360 295 / 2e-95 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT4G36350 286 / 2e-92 ATPAP25, PAP25 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 25, purple acid phosphatase 25 (.1) AT2G16430 284 / 3e-91 ATPAP10, PAP10 purple acid phosphatase 10 (.1.2) AT2G27190 281 / 4e-90 ATPAP12 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021376 [exp] 611 / 0 AT3G52780 539 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10040079 [exp] 500 / 3e-176 AT3G20500 686 / 0.0 purple acid phosphatase 18 (.1) Lus10019625 [exp] 496 / 1e-174 AT3G20500 673 / 0.0 purple acid phosphatase 18 (.1) Lus10021377 [exp] 477 / 5e-167 AT3G52820 603 / 0.0 purple acid phosphatase 22 (.1) Lus10021378 [exp] 485 / 2e-164 AT3G52820 597 / 0.0 purple acid phosphatase 22 (.1) Lus10017059 [exp] 434 / 2e-150 AT3G52820 536 / 0.0 purple acid phosphatase 22 (.1) Lus10017057 [exp] 411 / 2e-143 AT3G52780 375 / 1e-129 Purple acid phosphatases superfamily protein (.1.2) Lus10039978 [exp] 325 / 1e-106 AT5G34850 784 / 0.0 purple acid phosphatase 26 (.1) Lus10027710 [exp] 324 / 2e-106 AT5G34850 790 / 0.0 purple acid phosphatase 26 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G138200 [exp] 484 / 3e-170 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.001G423700 [exp] 482 / 3e-169 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.003G030700 [exp] 476 / 8e-167 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1) Potri.006G063700 [exp] 311 / 2e-101 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.003G176000 [exp] 308 / 5e-99 AT4G13700 739 / 0.0 purple acid phosphatase 23 (.1) Potri.018G024800 [exp] 303 / 1e-98 AT5G34850 742 / 0.0 purple acid phosphatase 26 (.1) Potri.005G233400 [exp] 300 / 1e-97 AT2G16430 700 / 0.0 purple acid phosphatase 10 (.1.2) Potri.017G055900 [exp] 301 / 6e-97 AT3G07130 816 / 0.0 purple acid phosphatase 15 (.1) Potri.004G160100 [exp] 298 / 2e-96 AT2G16430 779 / 0.0 purple acid phosphatase 10 (.1.2) Potri.002G243900 [exp] 300 / 3e-96 AT3G07130 805 / 0.0 purple acid phosphatase 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10017056 pacid=23172971 polypeptide=Lus10017056 locus=Lus10017056.g ID=Lus10017056.BGIv1.0 annot-version=v1.0 ATGGGCTTAGTCGGCCAACGGCGGCGCGTGAGCCAGCTGCTACTCGGACTCCTACTGTCACTTTGTCTCGCCGGTTTTTCATTTTCCGCCGACGCCTTCT CCTACACAAGGCCGCCGCGCCGCCCAGACATTCCCATCCGCCGATGGCTTGCTAGAGACGCTTCTACCCCACAACAGGTGCATATATCGATGGTGGGAGC AGATAAGATGAGAATATCATGGATAACGGACGACCCAACTCCGGCAACTGTCGATTACGGCACTTCTCCCGGAAACTGCCCCAATTCTGCTAATGGAACC ACCTACTACTACGAGTTTATGGGCGTTTACAAATCCGGCCAAATCCACGACGTCGTTATCGGTCCGTTACAGCCCGACACCGTTTATTACTACCGTTGCG GCAACGGAAACTCCGCCCGCCAGCTCAGCTTCAAAACTGCCCCGTCAGCCTTCCCCATCAAATTTGTCATCGTTGGGGACCTTGGCCAGACCGAGCACAC TAGCTCGACCTTACAACACATCTCCGAATCGAACTACGACGTATTGTTATTGCCTGGTGACTTGTCATACGCTGATTCGTTACAGCCGCGGTGGGACTCG TTCGGGCAAATGATGGAGCCACTGGCTAGCCAACGGCCGTGGATGGTGACACAAGGGAACCATGAGTTGGACGAATCAATAGTTATACATCCGACCCCAT TTATAGCGTACAACGCTCGCTGGCGGATGCCGTTCGAGGAGAGTGGCTCAACATCCAATCTCTACTATTCCTTTGACGTGTCGGGAGCCCATGTGATCAT GTTAGGCTCCTACACGGACTTTGGTCCATCTTCAGCCCAATACAAATGGCTTGAGTCAGATTTGGCCAAAGTTGATAGGAGTAAGACCCCTTGGCTTTTG GTTCTCGTCCATGCTCCTTGGTACAACTCCAACAAGGCTCATCAAGGGGAGACTGAATCCATTGACATGAAGAAGTACATGGAGAGCTTGCTCTATAATG CCCGAGTCGATGCAGTTTTCGCCGGTCATGTACACGCATACGAACGCTTTACACGTGTGTACAAAGAGAAAGAAGATAATTGTAGTCCGACATACATAAC AATTGGGGATGGAGGCAATCGCGAAGGCCTAGCAACAAAATACAATGATCCACAACCGGAGATTTCGATATTCAGGGAGGCGAGCTTCGGGCATGGAGAG CTAGAGGTGGTGAATGCTACACATGCACTATGGACTTGGCACAGGAATGACGATGGGGAGAATGTTGTGAGCGACTCAGTGTGGATTACTAGTTTATCTT ATGTTCCAAGCTGTAAAGCCTAG
AA sequence Show only first row Show all	>Lus10017056 pacid=23172971 polypeptide=Lus10017056 locus=Lus10017056.g ID=Lus10017056.BGIv1.0 annot-version=v1.0 MGLVGQRRRVSQLLLGLLLSLCLAGFSFSADAFSYTRPPRRPDIPIRRWLARDASTPQQVHISMVGADKMRISWITDDPTPATVDYGTSPGNCPNSANGT TYYYEFMGVYKSGQIHDVVIGPLQPDTVYYYRCGNGNSARQLSFKTAPSAFPIKFVIVGDLGQTEHTSSTLQHISESNYDVLLLPGDLSYADSLQPRWDS FGQMMEPLASQRPWMVTQGNHELDESIVIHPTPFIAYNARWRMPFEESGSTSNLYYSFDVSGAHVIMLGSYTDFGPSSAQYKWLESDLAKVDRSKTPWLL VLVHAPWYNSNKAHQGETESIDMKKYMESLLYNARVDAVFAGHVHAYERFTRVYKEKEDNCSPTYITIGDGGNREGLATKYNDPQPEISIFREASFGHGE LEVVNATHALWTWHRNDDGENVVSDSVWITSLSYVPSCKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52780		ATPAP20, PAP20	Purple acid phosphatases super...		Lus10017056 [exp]	0	1
					Lus10028110 [exp]	1.4	0.9121
AT3G06120	bHLH	MUTE, bHLH045	MUTE, basic helix-loop-helix (...		Lus10010503 [exp]	1.4	0.8993
AT2G37240			Thioredoxin superfamily protei...		Lus10030907 [exp]	7.1	0.8953
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10005762 [exp]	8.2	0.8848
					Lus10026928 [exp]	10.0	0.8731
AT2G46150			Late embryogenesis abundant (L...		Lus10027177 [exp]	11.0	0.8731
AT4G37330		CYP81D4	"cytochrome P450, family 81, s...		Lus10024817 [exp]	11.8	0.8731
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10012854 [exp]	12.6	0.8731
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10013728 [exp]	13.4	0.8731
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10004633 [exp]	14.1	0.8620

Compare expression of checked genes

Lus10017056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.