Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52780 356 / 4e-122 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT3G52820 315 / 6e-106 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G20500 306 / 2e-102 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT3G52810 278 / 2e-91 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT3G07130 211 / 2e-64 ATPAP15, PAP15 purple acid phosphatase 15 (.1) AT2G18130 206 / 3e-63 PAP11, ATPAP11 purple acid phosphatase 11 (.1) AT1G56360 206 / 6e-63 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT4G36350 199 / 2e-60 ATPAP25, PAP25 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 25, purple acid phosphatase 25 (.1) AT5G34850 199 / 3e-60 ATPAP26, PAP26 purple acid phosphatase 26 (.1) AT2G16430 195 / 3e-60 ATPAP10, PAP10 purple acid phosphatase 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021376 [exp] 434 / 8e-154 AT3G52780 539 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10017056 [exp] 386 / 8e-134 AT3G52780 562 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10040079 [exp] 316 / 2e-106 AT3G20500 686 / 0.0 purple acid phosphatase 18 (.1) Lus10019625 [exp] 314 / 2e-105 AT3G20500 673 / 0.0 purple acid phosphatase 18 (.1) Lus10021377 [exp] 305 / 1e-101 AT3G52820 603 / 0.0 purple acid phosphatase 22 (.1) Lus10021378 [exp] 310 / 3e-99 AT3G52820 597 / 0.0 purple acid phosphatase 22 (.1) Lus10017059 [exp] 261 / 3e-85 AT3G52820 536 / 0.0 purple acid phosphatase 22 (.1) Lus10028533 [exp] 222 / 4e-68 AT4G13700 696 / 0.0 purple acid phosphatase 23 (.1) Lus10039978 [exp] 214 / 9e-66 AT5G34850 784 / 0.0 purple acid phosphatase 26 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G138200 [exp] 305 / 5e-102 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.001G423700 [exp] 303 / 2e-101 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.003G030700 [exp] 291 / 2e-96 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1) Potri.003G176000 [exp] 228 / 2e-70 AT4G13700 739 / 0.0 purple acid phosphatase 23 (.1) Potri.017G055900 [exp] 222 / 2e-68 AT3G07130 816 / 0.0 purple acid phosphatase 15 (.1) Potri.002G243900 [exp] 214 / 1e-65 AT3G07130 805 / 0.0 purple acid phosphatase 15 (.1) Potri.006G063700 [exp] 201 / 4e-61 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.005G233400 [exp] 196 / 2e-59 AT2G16430 700 / 0.0 purple acid phosphatase 10 (.1.2) Potri.018G024800 [exp] 194 / 1e-58 AT5G34850 742 / 0.0 purple acid phosphatase 26 (.1) Potri.002G029300 [exp] 194 / 2e-58 AT2G16430 693 / 0.0 purple acid phosphatase 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10017057 pacid=23172960 polypeptide=Lus10017057 locus=Lus10017057.g ID=Lus10017057.BGIv1.0 annot-version=v1.0 ATGGGGTTATTAGTTATGTCACAGCGGCGGCAGCAGCTCCTGATTCTGTTGGCGGTGTGTCTCGCCGGTTTCCGCTTCCCCTCAGGCGCCGTCTCCTACA CAAGGCCGCCGCGGCGGCCTGACTTCCGGCGTGACTTGCACGTTGCGCGGCGGTTGGATGAGGACGACTCGACTCCACAACAGCCACTGGCTAGCCAACG GCCGTGGATGGATACACAAGGGAATCACGAGGTGGAGAAAATCCCTCTCATCCATAGAACGCCGTTCACCGCCTACAACGCACGGTGGCGGATGCCGTTT GAGGAGAGCGGATCCCCTTCCAATCTTTACTACTCGTTTGAAGTGGCTGGATCCCATGTGGTCATGTTGGGCTCGTATACGGATTTCGACCCATCTTCGG CCCAATACCAATGGCTTCAATCTGATTTAGCCAAGGTTGACCGGGGTAAGACTCCGTGGCTTTTGGTTCTAATCCATGCTCCTTGGTATAACACCAACAA AGCACATCAAGGTGAAGCCGAGTCTATTGATATGAAGCAGTCAATGGAGAGTCTGCTCTATAACGCTCGAGTTGACTTCGTGTTTGCTGGTCATGTTCAC GCATATGAACGCTTCAGTCGAGTTTACAAAGAAAAGGAGGACGATTGTGGTCCGGTCCATATAACGATTGGGGATGGCGGGAACCATGAAGGCTTAGCGA GAGATTACATGGATCCGCAACCGGGGATTTCGATATTTCGAGAGGCGAGCTTCGGACACGGAGAACTTGAGGTGGTGAACGCAACTCATGGTCAATGGAC ATGGCATCGGAACGATGATGGTAACAGTGTTGCGAGCGATTCAACTTGGATCACCAGTCTTTCTTCCGTTTCAAGTTGCAAGCTCTAG
AA sequence Show only first row Show all	>Lus10017057 pacid=23172960 polypeptide=Lus10017057 locus=Lus10017057.g ID=Lus10017057.BGIv1.0 annot-version=v1.0 MGLLVMSQRRQQLLILLAVCLAGFRFPSGAVSYTRPPRRPDFRRDLHVARRLDEDDSTPQQPLASQRPWMDTQGNHEVEKIPLIHRTPFTAYNARWRMPF EESGSPSNLYYSFEVAGSHVVMLGSYTDFDPSSAQYQWLQSDLAKVDRGKTPWLLVLIHAPWYNTNKAHQGEAESIDMKQSMESLLYNARVDFVFAGHVH AYERFSRVYKEKEDDCGPVHITIGDGGNHEGLARDYMDPQPGISIFREASFGHGELEVVNATHGQWTWHRNDDGNSVASDSTWITSLSSVSSCKL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52780		ATPAP20, PAP20	Purple acid phosphatases super...		Lus10017057 [exp]	0	1
AT2G31955		CNX2	cofactor of nitrate reductase ...		Lus10008908 [exp]	3.3	0.8054
					Lus10032837 [exp]	8.1	0.6497
AT2G40430			unknown protein		Lus10037530 [exp]	17.8	0.7408
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10036017 [exp]	18.4	0.7382
AT1G49430		LRD2, LACS2	LATERAL ROOT DEVELOPMENT 2, lo...		Lus10023832 [exp]	25.0	0.6953
AT5G12900			unknown protein		Lus10031820 [exp]	26.1	0.7125
AT4G34760			SAUR-like auxin-responsive pro...		Lus10026296 [exp]	28.0	0.6780
AT3G24570			Peroxisomal membrane 22 kDa (M...		Lus10034922 [exp]	32.6	0.7152
AT1G18700			DNAJ heat shock N-terminal dom...		Lus10021658 [exp]	33.0	0.7220
AT5G04600			RNA-binding (RRM/RBD/RNP motif...		Lus10007730 [exp]	33.1	0.7221

Compare expression of checked genes

Lus10017057 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.