Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02410 74 / 4e-15 cytochrome c oxidase assembly protein CtaG / Cox11 family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031633 [exp] 127 / 2e-35 AT1G02410 341 / 1e-119 cytochrome c oxidase assembly protein CtaG / Cox11 family (.1) Lus10007604 [exp] 92 / 1e-20 AT1G11340 694 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10005136 [exp] 92 / 2e-20 AT1G11340 471 / 2e-155 S-locus lectin protein kinase family protein (.1) Lus10013910 [exp] 91 / 3e-20 AT1G11340 628 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10007610 [exp] 91 / 4e-20 AT1G11410 693 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10005053 [exp] 90 / 5e-20 AT1G11410 299 / 1e-90 S-locus lectin protein kinase family protein (.1) Lus10013246 [exp] 73 / 4e-14 AT1G11340 678 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10025512 [exp] 69 / 8e-13 AT1G11340 530 / 5e-177 S-locus lectin protein kinase family protein (.1) Lus10030767 [exp] 67 / 3e-12 AT1G11340 670 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G078500 [exp] 56 / 2e-09 AT1G02410 316 / 2e-110 cytochrome c oxidase assembly protein CtaG / Cox11 family (.1) Potri.011G035700 [exp] 55 / 2e-08 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.004G028300 [exp] 48 / 4e-06 AT1G11340 742 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G035800 [exp] 45 / 5e-05 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036600 [exp] 42 / 0.0003 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036100 [exp] 42 / 0.0004 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017058 pacid=23173016 polypeptide=Lus10017058 locus=Lus10017058.g ID=Lus10017058.BGIv1.0 annot-version=v1.0 ATGCTCTGCATTTACACCGTCGATATTGAAGGGAAAGGGACTAGTTGTTTGACATGGCATGGTGGACTTCAAGGTTACGATTTCTATGTTCGTGTTGATG CTATTGAGATAGCTGATTACCTGAAGGAATCCGGTGGTCACGAGTTGAAGTTGAATTTGAGCATCATTGTTCCATTGAAGAAGAAACTTATCCGAACCTT GTTCCCTACAAGTGATGTTTCAAATTACTATGAGAACTCTGCGGCAACAAGTATCAAGCACGATACTTTCCAGCCTGAGCTTCCATTTTTCAGCCTCAAT TCGATCAAGCTGCAACTAACAATTTCTCCCCTACCACCAAACTTGGACAAGGGGGGTTTACAGCTCCAGCCGAGTAGGCAGCAGTCATTCAGCTTTAAGC AGTATTTTGCTGTAAGTGCAGCTGGTGGATCTTCTGCTACTGAGCAGAAGTCGAGGAAGACATTAATGTATCTTACGGGATTGGTTCTTGTGATGGTGGG TTGTACATATGCAGCGGTTCCTTTGTACAGAACATTTTTCCAAGCCACTGGTTATGGCGGTACTGTACAGCGTCGTGAGGTTCTCCCCCTCATGTCTTAC TATACTTTTTGCTGTCAGCTTTACTCTGATATATGTTGTTCTTTGGTGAACCAGATGTTTTGCTGTCAGCTTTTCTCTCATAGATATATGCTGTTCTTTG GTGAAGCAGATGCTGATTCCAGTTCAATTGTTTTGTGGGTTTTGTATAAGAGAAGATTTCACGGCATGCTAAAGACGGAACGGCGGCAACGAGGTATCTT GCTTTTCCAATATCTGGGTTCTGCTTGCTCATTTAGTTTGAAGAAGATTGTGTCATAA
AA sequence Show only first row Show all	>Lus10017058 pacid=23173016 polypeptide=Lus10017058 locus=Lus10017058.g ID=Lus10017058.BGIv1.0 annot-version=v1.0 MLCIYTVDIEGKGTSCLTWHGGLQGYDFYVRVDAIEIADYLKESGGHELKLNLSIIVPLKKKLIRTLFPTSDVSNYYENSAATSIKHDTFQPELPFFSLN SIKLQLTISPLPPNLDKGGLQLQPSRQQSFSFKQYFAVSAAGGSSATEQKSRKTLMYLTGLVLVMVGCTYAAVPLYRTFFQATGYGGTVQRREVLPLMSY YTFCCQLYSDICCSLVNQMFCCQLFSHRYMLFFGEADADSSSIVLWVLYKRRFHGMLKTERRQRGILLFQYLGSACSFSLKKIVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02410			cytochrome c oxidase assembly ...		Lus10017058 [exp]	0	1
AT5G14210			Leucine-rich repeat protein ki...		Lus10035225 [exp]	4.9	0.8211
AT3G63430			unknown protein		Lus10003090 [exp]	9.1	0.8243
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10012444 [exp]	11.0	0.7703
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Lus10032545 [exp]	18.2	0.7767
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10028740 [exp]	18.5	0.7612
AT5G50150			Protein of Unknown Function (D...		Lus10027683 [exp]	24.0	0.7560
AT1G65380		AtRLP10, CLV2	clavata 2, Receptor Like Prote...		Lus10026993 [exp]	28.4	0.7748
AT5G43810		PNH, ZLL, AGO10	ZWILLE, PINHEAD, ARGONAUTE 10,...		Lus10039386 [exp]	28.8	0.7745
AT5G50150			Protein of Unknown Function (D...		Lus10039949 [exp]	36.6	0.7590
AT5G43270	SBP	SPL2	squamosa promoter binding prot...		Lus10040595 [exp]	36.7	0.7437

Compare expression of checked genes

Lus10017058 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.