Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52820 516 / 0 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G52810 464 / 1e-162 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT3G52780 405 / 1e-139 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT3G20500 403 / 1e-138 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT3G07130 246 / 2e-76 ATPAP15, PAP15 purple acid phosphatase 15 (.1) AT4G13700 244 / 2e-76 ATPAP23, PAP23 purple acid phosphatase 23 (.1) AT5G34850 234 / 2e-72 ATPAP26, PAP26 purple acid phosphatase 26 (.1) AT1G56360 218 / 3e-66 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT2G27190 218 / 5e-66 ATPAP12 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) AT4G36350 215 / 5e-65 ATPAP25, PAP25 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 25, purple acid phosphatase 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021378 [exp] 533 / 0 AT3G52820 597 / 0.0 purple acid phosphatase 22 (.1) Lus10021377 [exp] 497 / 2e-175 AT3G52820 603 / 0.0 purple acid phosphatase 22 (.1) Lus10040079 [exp] 414 / 1e-142 AT3G20500 686 / 0.0 purple acid phosphatase 18 (.1) Lus10017056 [exp] 414 / 1e-142 AT3G52780 562 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10019625 [exp] 411 / 1e-141 AT3G20500 673 / 0.0 purple acid phosphatase 18 (.1) Lus10021376 [exp] 407 / 3e-141 AT3G52780 539 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10017057 [exp] 252 / 3e-81 AT3G52780 375 / 1e-129 Purple acid phosphatases superfamily protein (.1.2) Lus10016667 [exp] 249 / 2e-76 AT3G07130 788 / 0.0 purple acid phosphatase 15 (.1) Lus10027710 [exp] 239 / 3e-74 AT5G34850 790 / 0.0 purple acid phosphatase 26 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G030700 [exp] 506 / 6e-179 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1) Potri.001G423700 [exp] 411 / 7e-142 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.011G138200 [exp] 408 / 1e-140 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.003G176000 [exp] 250 / 3e-77 AT4G13700 739 / 0.0 purple acid phosphatase 23 (.1) Potri.017G055900 [exp] 249 / 3e-77 AT3G07130 816 / 0.0 purple acid phosphatase 15 (.1) Potri.002G243900 [exp] 238 / 4e-73 AT3G07130 805 / 0.0 purple acid phosphatase 15 (.1) Potri.006G063700 [exp] 231 / 3e-71 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.002G029300 [exp] 229 / 4e-70 AT2G16430 693 / 0.0 purple acid phosphatase 10 (.1.2) Potri.018G024800 [exp] 228 / 4e-70 AT5G34850 742 / 0.0 purple acid phosphatase 26 (.1) Potri.004G160100 [exp] 227 / 3e-69 AT2G16430 779 / 0.0 purple acid phosphatase 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10017059 pacid=23173025 polypeptide=Lus10017059 locus=Lus10017059.g ID=Lus10017059.BGIv1.0 annot-version=v1.0 ATGGAAAGCCACCACGCATCAACCAACTTTGAACTGCATCCACTTTCTCCTGGAGTCATCTTCACTCCCCACAATCGATCTGCATCTGATCCTCAGCAGG TCCACATATCAACTGCTGGGAAAGATCTCATGACAGTCACCTGGATAACTGACGACCGAACCGTCCATTCCACTGTTGAATATGGAACTCAACCGGGAAA GTATTCGGCCAAGGTTACCGGCGACCACAGGATTTCGTATCAGTTCTTAACCTATATCTCAGGGTCCATTCACCATGTGACTATCGGACCATTGAACCCG AACACGACTTATTATTACAAATGTGGCGGCAACGGTCCTGAATTTTCATTCAAGACCCCTCCTGCAGCATTCCCTCTCGAAATCGTTGTGGTTGGGGATT TGGGTCAATCCGAGTGCACAAAGTCAACCTTACGGGGACTCGAACAAAAAGACTATGACTTGCTTTTGCTACCGGGTGATTTATCCTATGCCAACAGCCG ACAACCGCTGTGGGACTCGTTTGGCCGATTGGTTGAACCGCAAGCAAGTCAGAGGCCATGGATGGTGACGGAAGGGAACCATGAGCTGGAGGGGTTCGAG ATAGATGATGACCCATTCAAGGCGTATAATGCGCGGTGGCTAATGCCGCATACTCAGAGTGGGTCCGCCTCGAACCTCTACTACTCATTTGATGTCGCCG GAACTCATATCATAATGCTGGGTTCCTGCGCTGAATCTGATCCTGGATCAGACCAGTACGAATGGCTCGTGGCTGATTTGGCTAGAATTGATAGAAAAGC CACGCCTTGGCTAATTGTTTCGATGCACATGCCATGGTACAACACAAATTATGAGAATCAAGGGCATGGTGAAACCATGAGGGTGGCTATGGAAGAGATG TTGTACAAGGCCAAAGTGGACATTGTCTTCTCAGGACATGTCCATGCTTACGAAAGATTCACTAGGGGTTATGACAACCAGCCTAACTCCGCTGGCCCGA TTTACATCACAATTGGAACTGGCGGATGTCATGGAGGAACTGATCCATCGTTTATGAGTCCAACTTCCCCATTGTCCGTGTACCGAGACTCGAGCTTCGG ACATGGGAGGCTGAGAATATTGGACGAAAAGCGAGCTCACTGGTCGTGGCATAGGAACGACGACAGTGATTCGTATGTGGCGGACGAGGTGTGGTTAAGC TGTTTAAGCACATTATCCGGTGATGAATGA
AA sequence Show only first row Show all	>Lus10017059 pacid=23173025 polypeptide=Lus10017059 locus=Lus10017059.g ID=Lus10017059.BGIv1.0 annot-version=v1.0 MESHHASTNFELHPLSPGVIFTPHNRSASDPQQVHISTAGKDLMTVTWITDDRTVHSTVEYGTQPGKYSAKVTGDHRISYQFLTYISGSIHHVTIGPLNP NTTYYYKCGGNGPEFSFKTPPAAFPLEIVVVGDLGQSECTKSTLRGLEQKDYDLLLLPGDLSYANSRQPLWDSFGRLVEPQASQRPWMVTEGNHELEGFE IDDDPFKAYNARWLMPHTQSGSASNLYYSFDVAGTHIIMLGSCAESDPGSDQYEWLVADLARIDRKATPWLIVSMHMPWYNTNYENQGHGETMRVAMEEM LYKAKVDIVFSGHVHAYERFTRGYDNQPNSAGPIYITIGTGGCHGGTDPSFMSPTSPLSVYRDSSFGHGRLRILDEKRAHWSWHRNDDSDSYVADEVWLS CLSTLSGDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52820		ATPAP22, PAP22	purple acid phosphatase 22 (.1...		Lus10017059 [exp]	0	1
					Lus10042238 [exp]	4.8	0.7742
AT1G02030	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10031166 [exp]	7.6	0.7519
AT1G65450			HXXXD-type acyl-transferase fa...		Lus10029920 [exp]	12.5	0.7370
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10034348 [exp]	14.4	0.7370
AT4G00350			MATE efflux family protein (.1...		Lus10036374 [exp]	15.0	0.7359
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10011999 [exp]	17.3	0.7340
AT1G60630			Leucine-rich repeat protein ki...		Lus10019429 [exp]	17.5	0.7304
AT4G35160			O-methyltransferase family pro...		Lus10024678 [exp]	19.4	0.7103
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10008682 [exp]	20.4	0.7296
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10016190 [exp]	20.5	0.7228

Compare expression of checked genes

Lus10017059 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.