Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38600 216 / 2e-71 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G29260 153 / 1e-46 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G29270 145 / 9e-44 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G51260 137 / 2e-40 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT1G04040 135 / 2e-39 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G25150 134 / 4e-39 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G44020 126 / 5e-36 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G24780 113 / 6e-31 ATVSP1, ATVSP, VSP1 vegetative storage protein 1 (.1.2) AT5G24770 106 / 2e-28 ATVSP2, VSP2 vegetative storage protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011140 [exp] 147 / 3e-44 AT4G29270 251 / 8e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10013478 [exp] 145 / 1e-43 AT4G25150 301 / 1e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10007939 [exp] 144 / 4e-43 AT4G25150 300 / 5e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10043042 [exp] 142 / 1e-42 AT4G29270 251 / 7e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10014968 [exp] 131 / 6e-38 AT4G29260 231 / 1e-75 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10011774 [exp] 127 / 2e-36 AT1G04040 272 / 8e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10023731 [exp] 126 / 4e-36 AT1G04040 273 / 3e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10021379 [exp] 114 / 5e-32 AT3G52820 97 / 2e-24 purple acid phosphatase 22 (.1) Lus10006849 [exp] 100 / 5e-27 AT4G25150 121 / 9e-35 HAD superfamily, subfamily IIIB acid phosphatase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G139700 [exp] 236 / 2e-79 AT2G38600 347 / 1e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.006G110900 [exp] 235 / 2e-79 AT2G38600 322 / 2e-112 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.006G152900 [exp] 162 / 3e-50 AT4G29260 292 / 3e-100 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.001G191000 [exp] 151 / 6e-46 AT4G25150 259 / 8e-87 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.004G232900 [exp] 141 / 4e-42 AT5G51260 346 / 3e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.002G257700 [exp] 131 / 4e-38 AT1G04040 317 / 1e-109 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.010G066500 [exp] 119 / 1e-33 AT1G04040 285 / 5e-97 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.010G193500 [exp] 74 / 7e-16 AT2G39920 195 / 1e-60 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03767 [flax] [poplar] Acid_phosphat_B HAD superfamily, subfamily IIIB (Acid phosphatase)
Representative CDS sequence Show only first row Show all	>Lus10017060 pacid=23172990 polypeptide=Lus10017060 locus=Lus10017060.g ID=Lus10017060.BGIv1.0 annot-version=v1.0 ATGGATTACGCCACCGACATCATCATCAACAACGGCACTGATAATCAATATGATGGGATGGACGCGTGGGTAATGGACGTGGACGACACGTGCATCTCCA ACGCGCTTTACTACAAGGTTAAGAGATCCTATGGCTGCCTTCCTTTTGACCCGCTTTCTTTCCGGGACTGGGCCTATAGGGCCCATTGTCCTGCTATTCC CGCTGTGTTGGGCCTGTTTGAGAATCTGAAGGCCATGGGCTTTAAAGTGTTCCTCATTAGTGGAAGGGACGAGGAAGGGCTTGGAGATGCCACGCGTCTT AACCTGGCTCGCCAAGGGTTCGTGGGGTATGAGCGGCTTATACTGAGACCGGCGTCGTACAAGGGGCAGAGTGCGGTGGTGTACAAGTCGGAGATGAGGA GGCTGCTGATGGAGGAAGGGTACAGAATATGGGGGAATGTTGGGGATCAGTGGACCGATCTTACGGGTCATTCTTTGGGTAATCGGACCTTTAAGCTTCC AAATCCCATGTACTTTGTACCCTAA
AA sequence Show only first row Show all	>Lus10017060 pacid=23172990 polypeptide=Lus10017060 locus=Lus10017060.g ID=Lus10017060.BGIv1.0 annot-version=v1.0 MDYATDIIINNGTDNQYDGMDAWVMDVDDTCISNALYYKVKRSYGCLPFDPLSFRDWAYRAHCPAIPAVLGLFENLKAMGFKVFLISGRDEEGLGDATRL NLARQGFVGYERLILRPASYKGQSAVVYKSEMRRLLMEEGYRIWGNVGDQWTDLTGHSLGNRTFKLPNPMYFVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38600			HAD superfamily, subfamily III...		Lus10017060 [exp]	0	1
AT2G38600			HAD superfamily, subfamily III...		Lus10021380 [exp]	1.0	0.9818
AT2G28790			Pathogenesis-related thaumatin...		Lus10040843 [exp]	1.4	0.9726
AT4G38400		ATEXPL2, ATHEXP...	EXPANSIN L2, expansin-like A2 ...		Lus10025116 [exp]	2.4	0.9574
AT1G11080		SCPL31	serine carboxypeptidase-like 3...		Lus10011213 [exp]	3.7	0.9395
AT1G31490			HXXXD-type acyl-transferase fa...		Lus10023806 [exp]	6.9	0.9457
AT5G17390			Adenine nucleotide alpha hydro...		Lus10034661 [exp]	7.7	0.9448
AT1G49000			unknown protein		Lus10032453 [exp]	8.1	0.9196
AT1G24620			EF hand calcium-binding protei...		Lus10028913 [exp]	8.1	0.9446
					Lus10036557 [exp]	10.2	0.9093
					Lus10042011 [exp]	11.0	0.9203

Compare expression of checked genes

Lus10017060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.