Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17090 427 / 8e-151 Protein phosphatase 2C family protein (.1.2) AT4G38520 345 / 3e-118 Protein phosphatase 2C family protein (.1.2) AT5G66080 344 / 4e-118 Protein phosphatase 2C family protein (.1) AT3G51370 337 / 6e-117 Protein phosphatase 2C family protein (.1.2) AT3G12620 336 / 4e-115 Protein phosphatase 2C family protein (.1.2) AT3G55050 330 / 9e-113 Protein phosphatase 2C family protein (.1.2) AT4G33920 288 / 2e-96 Protein phosphatase 2C family protein (.1) AT5G02760 283 / 2e-94 Protein phosphatase 2C family protein (.1) AT5G06750 280 / 3e-94 Protein phosphatase 2C family protein (.1.2.3) AT3G16560 137 / 5e-37 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037779 [exp] 553 / 0 AT3G17090 562 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10005054 [exp] 358 / 3e-123 AT4G38520 582 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10027825 [exp] 357 / 6e-123 AT4G38520 586 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10025076 [exp] 354 / 8e-122 AT4G38520 609 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10024008 [exp] 353 / 1e-121 AT4G38520 605 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10041861 [exp] 352 / 5e-121 AT3G51370 630 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10028408 [exp] 349 / 2e-120 AT3G51370 457 / 5e-163 Protein phosphatase 2C family protein (.1.2) Lus10023470 [exp] 336 / 4e-115 AT3G12620 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10040346 [exp] 330 / 2e-112 AT3G12620 616 / 0.0 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G104300 [exp] 474 / 2e-169 AT3G17090 568 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G146700 [exp] 466 / 2e-166 AT3G17090 554 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.004G177100 [exp] 361 / 1e-124 AT4G38520 608 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.007G061100 [exp] 357 / 5e-123 AT3G51370 590 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.009G137400 [exp] 356 / 1e-122 AT4G38520 657 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G108500 [exp] 349 / 5e-120 AT3G51370 646 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G046900 [exp] 342 / 2e-117 AT3G12620 543 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G214700 [exp] 338 / 6e-116 AT3G12620 542 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G082800 [exp] 308 / 2e-104 AT3G12620 502 / 4e-179 Protein phosphatase 2C family protein (.1.2) Potri.006G192600 [exp] 304 / 3e-102 AT5G06750 572 / 0.0 Protein phosphatase 2C family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10017061 pacid=23167414 polypeptide=Lus10017061 locus=Lus10017061.g ID=Lus10017061.BGIv1.0 annot-version=v1.0 ATGAATGGTCAAATTGAGTCTACAGCTATATCAGCTGAGACAGAAGGTGTTGTGACTGCTGACACCATTCGAAGAGCCTTTCGAGCCACTGAGGAAGGGT TTACTTCAGTTGTCTCTGAGTTATGGAGTACTCAGCCTCAAATAGCTACCGCTGGAACGTGTTGCCTGGTGGGAGTAATATTCCAGCAGACCCTTTTCGT CGCGAACCTGGGAGACTCTCGTGTCGTCTTGGGGAAGAAGGTTGGTAATACCGGTGGCATCGCTGCTCTCCAGCTGTCTACTGAACATAATGCAAACCTT GAGGCCATTAGACATGAACTTAAGGAGTTGCATCCATCTGATCCGCAGATTGTGGTACTGAGGCATGGTGTTTGGAGAGTCAAAGGAATTATTCAGGTTT CAAAATCCATGGGAGATGTCTACCTGAAGCATGCACGGTTTAACAGAGAACCAATAAATGCAAAATTCAGACTTCCTCAGCCAATCGACATGCCTATCTT GAGTGCCGATCCGACGATCCTAACTCATGCTATCCATCCAAGCGACTCCTTTCTTATATTTGCATCTGATGGTCTATGGGAACACTTGAGCAATGAAAAG GCTGTGGATATTGTCCACAGCCATCCACATGCTGGAAGCGCAAAGAGACTAGTGAAGGCAGCTCTGCAGGAAGCGGCTAGAAAGCGAGAGATGAGGTACT CGGACTTGGGGAAGATCGACAAGAAAGTGAGGCGGCATTTCCACGACGACATAACAGTCATAGTTTTGTTCTTGGATCATGATGCTATATCCAGAGGAGG GATGGTCCAACCCACGCCTACAGTCTCGGTCCGCAGTGCTTTGGAGCACTGA
AA sequence Show only first row Show all	>Lus10017061 pacid=23167414 polypeptide=Lus10017061 locus=Lus10017061.g ID=Lus10017061.BGIv1.0 annot-version=v1.0 MNGQIESTAISAETEGVVTADTIRRAFRATEEGFTSVVSELWSTQPQIATAGTCCLVGVIFQQTLFVANLGDSRVVLGKKVGNTGGIAALQLSTEHNANL EAIRHELKELHPSDPQIVVLRHGVWRVKGIIQVSKSMGDVYLKHARFNREPINAKFRLPQPIDMPILSADPTILTHAIHPSDSFLIFASDGLWEHLSNEK AVDIVHSHPHAGSAKRLVKAALQEAARKREMRYSDLGKIDKKVRRHFHDDITVIVLFLDHDAISRGGMVQPTPTVSVRSALEH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17090			Protein phosphatase 2C family ...		Lus10017061 [exp]	0	1
AT3G17090			Protein phosphatase 2C family ...		Lus10037779 [exp]	4.2	0.7433
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Lus10005772 [exp]	4.2	0.7489
AT3G22540			Protein of unknown function (D...		Lus10006107 [exp]	5.7	0.7077
AT3G05170			Phosphoglycerate mutase family...		Lus10029974 [exp]	7.7	0.6524
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10012056 [exp]	8.0	0.6926
AT1G12940		ATNRT2.5	nitrate transporter2.5 (.1)		Lus10030588 [exp]	17.0	0.6266
AT1G14390			Leucine-rich repeat protein ki...		Lus10030785 [exp]	19.2	0.6579
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10001712 [exp]	25.0	0.6690
AT5G62720			Integral membrane HPP family p...		Lus10036673 [exp]	32.7	0.6313
AT1G53700		PK3AT, WAG1	PROTEIN KINASE 3 ARABIDOPSIS T...		Lus10005583 [exp]	33.0	0.6642

Compare expression of checked genes

Lus10017061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.