Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16180 1191 / 0 unknown protein AT3G28720 44 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037780 [exp] 1535 / 0 AT4G16180 1215 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G146800 [exp] 1270 / 0 AT4G16180 1235 / 0.0 unknown protein Potri.008G104100 [exp] 155 / 3e-44 AT4G16180 143 / 8e-41 unknown protein Potri.017G078700 [exp] 45 / 0.0003 AT3G28720 823 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017062 pacid=23167450 polypeptide=Lus10017062 locus=Lus10017062.g ID=Lus10017062.BGIv1.0 annot-version=v1.0 ATGGCTGGTAAATCGGTGTCAAATTCGTCATCTCACGCTTCGATTCTATCACTGCCTCTTCTTCTCCTACTGTTCTTGACTCGCTCCGACTCCGCGCCGC AACCCTTCCGTAGAGACCCAGGCCATGCTCAATGGCATCACGGAGCCTTTCACGATGTTAAAGAGACAGTCCGATCCGATGTTCGCCGTATGCTGCACAC TCGCGCCGAGGTTCCGTTTCAGGTTCCGCTGGAGGTGAATGTTGTCCTTGTCGGTTTTGGTGGCGATGGAGGCTATAGATACAACTTGGATGTGAATAAG CTGGAGGAGTTTTTGAAACTCAGCTTTCCTACTCACAGACCTTCGTGCTTAGAGACCGGGGAGCCTCTGGATATTGAGCATCACCTTATCTATAATGTGT TTCCTGCTGGGCAGGCGGAACTGATTGCACTAGAGAAAGCATTAAAAGAGGCTATGGTTCCTGCAGGGTCTGCTAGAGAGACTGATTTTGGGAGGGAGGT CCCGTTATTTGAGGTGGAGGCAACTACTCTGGAGCCTGTATTTCACAAATTCCATTCCTACATTTTTGACACCGAAGCTATGGAGTTCTCGGGGGATGCA GAGCATGATAGGCCTGCTCCTGTTGCTATCTTTCTTGTCAACTTCGACAAGGTAAGGATGGATCCCAGGAACAAGGAAATTGATCTTGATAGGTTGATGT TTAGCAAAATCGAGACGTTGTCTGAAGAAGAACTGAAGAAACAAGAGGGTGACTATATTTATCGGTACAAATATAGTGGAGGAGGAGCAAGTCAAGTCTG GCTGAGCTCAGACAGGTTTGTTGTGATTGACTTATCAGCTGGTCCCTGTACATATGGCAAGATCGAAACTGAAGAGGGAAGCGTTAGTACTAGAACAATG CCTCGGATAAGGAATGTGGTACTTCCAAAAGGACCTGGTATAGGAACTATTAGTGATCATTCCAGCCCTGAGATATTTCTTGGGCAAATTTCAGCTCTGG TGTCAACCACGGTTGAGCATGTTATAGCTCCAGATGTCAGGTTTGAGACTGTTGATCTGACAACTAGGTTGCTTGTACCAATCATTGTGCTTCAAAATCA CAATAGATACAATATCATGCAATCTGGCCATAACTACAGCATAGACACATCGGAAATTGAGACAGAGGCGAGTGAAATTGCTTGGAAGATGGTTCACAAT GAGCAAGAAGTCGTAGTGGTGGGTGGTTCACATTCATTACATCGTCATGAAAAGTTGGCAATTGCTGTCTCGAAAGCAATGCGTGGGCATTCACTACAGG AGACTAGAAAGGATGGACGCTTCCACGTTCACACCAAAACATATCTGGATGGAGCTATACTCAAAGAAGAAATGGAGCGGTCGGCTGATGTGCTTGCTGC TGGTTTACTAGAGGTGGCAGACCCCTCTCTGTCTAGTAAATTTTTCCTGCGCCAGCACTGGGCGGATGAATCAGATGGCTCTTCTGATTCTATTATTAAA CACAAACCTCTATGGGCTAGTTATGACTTTAACCGCGGGAAGGAAAAGAAGAAGACGAAGAATAAGAACCAGCATAAGAAACAAGGAGATGTCTATAGAA CTTATGGAACGAGAGTTATTCCTGTCTTTGTGCTATCATTGGCTGATGTGGACCCACAGCTTATGATGGAAGATGAGAGCCTTGTTTGGACTAGCAACGA TGTCGTCATTGTTCTTGAGCATCAAAATGATAAGATACCTCTGAGTTATGTTTCGGAAACGGAAAGAAGGACAGCCCTTCCGTCTCTTCCACAACGTCAC ATAATGGCAGGCCTTGCCTCTGCTGTCGGTGGGCTGAGCGCCCCGTACGAGAAGGCTTCCCATGTGCACGAGAGGCCAGTCGTTAATTGGCTTCTCGCAG CTGGATGCCATCCATTTGGCCCATTTTCAAACACTTCCCAAACAAGTAAACTCCTGCAAGACGTTGCTTTGAGGAACACTATATATGCTCGTGTAGACGC TGCGCTTCATAAGATTCGTGATACATCCGAGAGTGTCCAACTTTTCGCATCAGAGTACCTGAAAACCCCGCTGGGTGAACCTGTGAAAGGCCAGAAGAAC AAGACGACTACTGAACTGTGGTTAGAGAAGTTCTACAAGAAAACGACTAACCTGCCCGAACCCTTCCCTCATGAACTGGTTGAACGACTCGAGAAATACC TCGATAATATCGAGGAGCAACTCGTAGACCTCTCGTCCTTACTGTACGACCACAAACTACAGGATGCACATGTGAACAGCTCGGAAATTCTTCAGAGCTC GATCTTTACGCAGCAGTATGTCGAGCATGTGTTGTCTAGTGAGAAGGACAAGATGAAGTGCTGCGAGATCGAGTACAAGTATCCGGTGCATTCATCGCAA ACTTTCATCTATGGCGGAATTCTCCTGGCAGGATTTGTGGTGTACTTCCTGGTCATTTTCTTCTCTAATCCGGTCCGATGA
AA sequence Show only first row Show all	>Lus10017062 pacid=23167450 polypeptide=Lus10017062 locus=Lus10017062.g ID=Lus10017062.BGIv1.0 annot-version=v1.0 MAGKSVSNSSSHASILSLPLLLLLFLTRSDSAPQPFRRDPGHAQWHHGAFHDVKETVRSDVRRMLHTRAEVPFQVPLEVNVVLVGFGGDGGYRYNLDVNK LEEFLKLSFPTHRPSCLETGEPLDIEHHLIYNVFPAGQAELIALEKALKEAMVPAGSARETDFGREVPLFEVEATTLEPVFHKFHSYIFDTEAMEFSGDA EHDRPAPVAIFLVNFDKVRMDPRNKEIDLDRLMFSKIETLSEEELKKQEGDYIYRYKYSGGGASQVWLSSDRFVVIDLSAGPCTYGKIETEEGSVSTRTM PRIRNVVLPKGPGIGTISDHSSPEIFLGQISALVSTTVEHVIAPDVRFETVDLTTRLLVPIIVLQNHNRYNIMQSGHNYSIDTSEIETEASEIAWKMVHN EQEVVVVGGSHSLHRHEKLAIAVSKAMRGHSLQETRKDGRFHVHTKTYLDGAILKEEMERSADVLAAGLLEVADPSLSSKFFLRQHWADESDGSSDSIIK HKPLWASYDFNRGKEKKKTKNKNQHKKQGDVYRTYGTRVIPVFVLSLADVDPQLMMEDESLVWTSNDVVIVLEHQNDKIPLSYVSETERRTALPSLPQRH IMAGLASAVGGLSAPYEKASHVHERPVVNWLLAAGCHPFGPFSNTSQTSKLLQDVALRNTIYARVDAALHKIRDTSESVQLFASEYLKTPLGEPVKGQKN KTTTELWLEKFYKKTTNLPEPFPHELVERLEKYLDNIEEQLVDLSSLLYDHKLQDAHVNSSEILQSSIFTQQYVEHVLSSEKDKMKCCEIEYKYPVHSSQ TFIYGGILLAGFVVYFLVIFFSNPVR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16180			unknown protein		Lus10017062 [exp]	0	1
AT3G07660			Kinase-related protein of unkn...		Lus10036414 [exp]	1.4	0.9537
AT3G07660			Kinase-related protein of unkn...		Lus10041089 [exp]	2.0	0.9532
AT2G27460			sec23/sec24 transport family p...		Lus10020622 [exp]	2.2	0.9268
AT5G53620			unknown protein		Lus10008846 [exp]	2.8	0.9341
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Lus10042807 [exp]	3.0	0.9252
AT4G16180			unknown protein		Lus10037780 [exp]	4.2	0.9405
AT3G15880		WSIP2, TPR4	TOPLESS-RELATED 4, WUS-interac...		Lus10043258 [exp]	5.7	0.9153
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Lus10005061 [exp]	5.7	0.9227
AT5G59740			UDP-N-acetylglucosamine (UAA) ...		Lus10040866 [exp]	6.2	0.9106
AT4G15080			DHHC-type zinc finger family p...		Lus10027339 [exp]	7.1	0.8815

Compare expression of checked genes

Lus10017062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.