Plant FIBer expression Database

Lus10017064 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037782
[exp]
261 / 7e-90 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G102300
[exp]
92 / 9e-23 AT3G06600 / unknown protein
Potri.008G103600
[exp]
79 / 1e-17 AT3G06600 / unknown protein
PFAM info
Representative CDS sequence
>Lus10017064 pacid=23167484 polypeptide=Lus10017064 locus=Lus10017064.g ID=Lus10017064.BGIv1.0 annot-version=v1.0
ATGACGAAAGCTAAAGACAATCACACTCCGGCCAAACACCTCTCGTCGCGAGCTTCTGATGCCGGGAATCGTCTGCCGAAAGAATCTCAATCTAAGAAGC
ATCCAAAGATTGCTAAGCGGAGCTTAGTCAGCGAGTTCACCACCATATCTGAAGATGCGTCTTCTGAAACCGTCGAAGATTTGAGTTGTTTCTCGGAGAT
GTTAGAAGCCGATAACAATGATGAGCTAATCAAGAACTCTTTGGTGCTGAGTCCAGCTCTCTCTTCTACATCAGAAATAGCCCCGTCCTCTCATGTCCCT
CTTACACCCGAGGTCATCAATATTATATATGATGGAACTAATGGACTAGTTAAGCCAGATATTCAACCCGTGGAAACAGATCTCATTGTCAATCTCCTCA
AGGAAGTGCAATCTGAAGCTCCAGAATCTGTTGATGCTAATAATCGTTACAAGAAGATCCTGGACGAGTTGGTTAAGGTCATCATAGATGAGTATTGCGC
TCTACCTGAAGAGACAAGCTGGTTGATTAAGCTTCTTTCATGGAAAAGGGGAGTTGTGTTTCTGTATTTTCTGACATGGAGCTTCGTAGTTTGCATGCTG
ATGCTGGCATATTTTGATTCTGGATGCGGTGGCTATGACTGCAGACTTCCCCCAACTTGA
AA sequence
>Lus10017064 pacid=23167484 polypeptide=Lus10017064 locus=Lus10017064.g ID=Lus10017064.BGIv1.0 annot-version=v1.0
MTKAKDNHTPAKHLSSRASDAGNRLPKESQSKKHPKIAKRSLVSEFTTISEDASSETVEDLSCFSEMLEADNNDELIKNSLVLSPALSSTSEIAPSSHVP
LTPEVINIIYDGTNGLVKPDIQPVETDLIVNLLKEVQSEAPESVDANNRYKKILDELVKVIIDEYCALPEETSWLIKLLSWKRGVVFLYFLTWSFVVCML
MLAYFDSGCGGYDCRLPPT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10017064
[exp]
0 1
AT2G24490 ATRPA32A, RPA2,... SUPPRESSOR OF ROS1, replicon p... Lus10020154
[exp]
4.7 0.9178
AT5G46740 UBP21 ubiquitin-specific protease 21... Lus10043126
[exp]
12.2 0.9116
AT3G61740 SDG14, ATX3 SET domain protein 14 (.1.2) Lus10004012
[exp]
12.8 0.9080
AT4G31400 CTF7 damaged DNA binding;DNA-direct... Lus10021277
[exp]
17.1 0.8914
AT3G27640 Transducin/WD40 repeat-like su... Lus10032126
[exp]
17.2 0.9013
AT1G47230 CYCA3;4 CYCLIN A3;4 (.1.2) Lus10018715
[exp]
17.8 0.9084
AT2G24490 ATRPA32A, RPA2,... SUPPRESSOR OF ROS1, replicon p... Lus10026954
[exp]
18.3 0.9061
AT3G18524 ATMSH2, MSH2 MUTS homolog 2 (.1) Lus10032469
[exp]
20.5 0.9008
AT4G02060 MCM7, PRL PROLIFERA, Minichromosome main... Lus10001452
[exp]
23.4 0.9056
AT2G40550 ETG1 E2F target gene 1 (.1) Lus10012889
[exp]
23.5 0.9030

Lus10017064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.