Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06590 154 / 1e-46 bHLH bHLH148, AIF2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G17100 147 / 6e-44 bHLH bHLH147, AIF3 sequence-specific DNA binding transcription factors (.1.2) AT1G09250 123 / 9e-35 bHLH bHLH149, AIF4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G05800 96 / 2e-24 bHLH bHLH150, AIF1 AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 (.1) AT3G59060 40 / 0.0007 bHLH PIF5, PIL6 PHYTOCHROME-INTERACTING FACTOR 5, phytochrome interacting factor 3-like 6 (.1.2.3.4) AT2G47270 38 / 0.0007 bHLH bHLH151, UPB1 UPBEAT1, sequence-specific DNA binding transcription factors;transcription regulators (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037783 [exp] 268 / 2e-91 AT3G06590 172 / 9e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10031425 [exp] 52 / 1e-08 AT1G09250 51 / 7e-09 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10033562 [exp] 41 / 0.0002 AT1G18400 121 / 5e-34 BR enhanced expression 1 (.1) Lus10010907 [exp] 41 / 0.0003 AT3G06590 81 / 8e-19 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G103500 [exp] 231 / 7e-77 AT3G17100 174 / 2e-54 sequence-specific DNA binding transcription factors (.1.2) Potri.010G147400 [exp] 213 / 9e-70 AT3G17100 174 / 3e-54 sequence-specific DNA binding transcription factors (.1.2) Potri.005G012400 [exp] 127 / 2e-36 AT1G09250 109 / 1e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G007700 [exp] 112 / 7e-31 AT1G09250 95 / 4e-24 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G201500 [exp] 44 / 1e-05 AT3G58850 82 / 4e-21 phy rapidly regulated 2 (.1) Potri.002G060100 [exp] 41 / 0.0001 AT3G58850 80 / 4e-20 phy rapidly regulated 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017065 pacid=23167448 polypeptide=Lus10017065 locus=Lus10017065.g ID=Lus10017065.BGIv1.0 annot-version=v1.0 ATGGCGTCACCGATGATAACTTCGAATCCAGTAACGAACAACACCAGCAACGTGGATCGGTCGAGGAGGAAGAAGAAGAAGAAGTTGCAGGCGGCCGTTC AATCGCAGCAGAAGCTGAACCAGGATCACGCCAAATGGAAAACAGAGGCTCAACAACAAATCTACTCATCCAAACTCATCCAAGCCTTGAGCCAAGTCCA GCTCAATCCTTCCTCCCCTTCGGCTCCGCGCCGCGGCCGAGCCGTTCGTGAAGCCGCCGATCAAGCCCTCGCCGTCGCCGCCAGAGGGAGATCCAGGTGG AGCAGAGCCATCTTGACTAGCCGTATCAAACTCAAATTCCGTAAGCAACAGCAGCATAAGAGGCAGCAGCTGCATCAGCAGCAACAGCAACACAGACTCA TCTCCGCTTCCGCCGGGAGTACCAGCCGCTCGAGGAAGCCGAGAGTCAGCGTGCTGAGGTTGAGAGGTAAGACTTTGCCCGCCGTGCAAAGGAAAGTCCG GCTTCTCGGCCGGTTAGTCCCCGGTTGCCGGAAGGAACCGATGCCAGTGATTCTAGAAGAAGCTACAGATTACATTGCTGCTTTGGAGATGCAGGTCCGA GCCATGAGTGCCCTGGCGGAGCTTTTGTCCGGCGGCTCCTCGTCCTCTTCTAGCACTGGTCCGCATCCGTCCAGTTGA
AA sequence Show only first row Show all	>Lus10017065 pacid=23167448 polypeptide=Lus10017065 locus=Lus10017065.g ID=Lus10017065.BGIv1.0 annot-version=v1.0 MASPMITSNPVTNNTSNVDRSRRKKKKKLQAAVQSQQKLNQDHAKWKTEAQQQIYSSKLIQALSQVQLNPSSPSAPRRGRAVREAADQALAVAARGRSRW SRAILTSRIKLKFRKQQQHKRQQLHQQQQQHRLISASAGSTSRSRKPRVSVLRLRGKTLPAVQRKVRLLGRLVPGCRKEPMPVILEEATDYIAALEMQVR AMSALAELLSGGSSSSSSTGPHPSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06590	bHLH	bHLH148, AIF2	basic helix-loop-helix (bHLH) ...		Lus10017065 [exp]	0	1
AT3G06590	bHLH	bHLH148, AIF2	basic helix-loop-helix (bHLH) ...		Lus10037783 [exp]	2.6	0.8775
AT3G52470			Late embryogenesis abundant (L...		Lus10021286 [exp]	4.0	0.8740
AT4G22910		CCS52A1, FZR2	cell cycle switch protein 52 ...		Lus10024482 [exp]	4.9	0.8462
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10029144 [exp]	6.3	0.8523
AT4G16360			5'-AMP-activated protein kinas...		Lus10038783 [exp]	6.5	0.8571
AT5G64813		LIP1	Light Insensitive Period1, Ras...		Lus10005795 [exp]	7.2	0.8270
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10025657 [exp]	8.8	0.8456
AT3G11320			Nucleotide-sugar transporter f...		Lus10028255 [exp]	9.5	0.8608
AT1G79340		AtMCP2d, ATMC4	metacaspase 2d, metacaspase 4 ...		Lus10001835 [exp]	10.4	0.8268
AT4G39820			Tetratricopeptide repeat (TPR)...		Lus10025185 [exp]	12.0	0.8615

Compare expression of checked genes

Lus10017065 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.