Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49510 307 / 5e-108 PFD3, PDF3 prefoldin 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011145 [exp] 337 / 6e-120 AT5G49510 306 / 9e-108 prefoldin 3 (.1.2) Lus10043046 [exp] 334 / 8e-119 AT5G49510 302 / 3e-106 prefoldin 3 (.1.2) Lus10037784 [exp] 278 / 1e-96 AT5G49510 221 / 3e-74 prefoldin 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G147600 [exp] 318 / 2e-112 AT5G49510 293 / 2e-102 prefoldin 3 (.1.2) Potri.008G103400 [exp] 313 / 2e-110 AT5G49510 295 / 6e-103 prefoldin 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0200 [flax] [poplar] Prefoldin PF02996 [flax] [poplar] Prefoldin Prefoldin subunit
Representative CDS sequence Show only first row Show all	>Lus10017066 pacid=23167473 polypeptide=Lus10017066 locus=Lus10017066.g ID=Lus10017066.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCGTCATCGTTGACGGGTGCGACGGAGAGAAGAGGGATACCCGGAGCTCAGTTCGTGGAAGATGTCGATACCTATCTCACCCAATCTGGCC TCGACGTCACCTCTGCACTCTCCTTCCTCCAAGAAAGGCTTCAGCAGTATAGAGTTGTGGAGATGAAACTCCTTGCCCAGCAAAGGGATCTTCAGGCGAA GATTCCTGATATTGAGAAATGCTTGGATGTTGTTGCCACTTTGCAGTCTAAGAAGGGTACTGGTGAGGCACTTGTTACCGACTTCGAAGTGGCTGAAGGC ATCTACTCACGGGCTCGTATCGATGAGAGTGACTCGGTTTGTTTATGGCTGGGAGCAAATGTCATGTTGGAGTATTCATGTGAAGAGGCCACTACTCTGC TTCAGAAGAATTTAGAGAATGCTAAAGCTAGTCTAGAAGTCCTTATTGCGGATCTGCAATTCGTCAGAGATCAAGTCACAATAACACAGGTCACTGTTGC CCGCGTGTATAACTGGGATGTTCATCAGCGTAGATTGAAACAAGCCACTGGTGCTGCTAAAGATTTATGA
AA sequence Show only first row Show all	>Lus10017066 pacid=23167473 polypeptide=Lus10017066 locus=Lus10017066.g ID=Lus10017066.BGIv1.0 annot-version=v1.0 MASSSSLTGATERRGIPGAQFVEDVDTYLTQSGLDVTSALSFLQERLQQYRVVEMKLLAQQRDLQAKIPDIEKCLDVVATLQSKKGTGEALVTDFEVAEG IYSRARIDESDSVCLWLGANVMLEYSCEEATTLLQKNLENAKASLEVLIADLQFVRDQVTITQVTVARVYNWDVHQRRLKQATGAAKDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10017066 [exp]	0	1
AT4G28360			Ribosomal protein L22p/L17e fa...		Lus10006865 [exp]	2.2	0.9604
AT5G61970			signal recognition particle-re...		Lus10032538 [exp]	3.0	0.9424
AT5G13110		G6PD2	glucose-6-phosphate dehydrogen...		Lus10003134 [exp]	3.7	0.9582
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10022019 [exp]	3.9	0.9518
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10015106 [exp]	3.9	0.9560
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10011057 [exp]	4.0	0.9538
AT1G67420			Zn-dependent exopeptidases sup...		Lus10015792 [exp]	4.2	0.9493
AT5G27400			S-adenosyl-L-methionine-depend...		Lus10015166 [exp]	4.6	0.9335
AT3G50120			Plant protein of unknown funct...		Lus10010064 [exp]	4.9	0.9401
AT5G59613			unknown protein		Lus10005899 [exp]	5.3	0.9449

Compare expression of checked genes

Lus10017066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.