Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49520 162 / 2e-46 WRKY ATWRKY48, WRKY48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) AT1G29860 149 / 2e-42 WRKY ATWRKY71, WRKY71 WRKY DNA-binding protein 71 (.1) AT2G47260 149 / 7e-42 WRKY ATWRKY23, WRKY23 WRKY DNA-binding protein 23 (.1) AT4G18170 145 / 1e-40 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1) AT1G69310 143 / 5e-40 WRKY ATWRKY57, WRKY57 WRKY DNA-binding protein 57 (.1.2) AT5G46350 139 / 3e-38 WRKY ATWRKY8, WRKY8 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 8, WRKY DNA-binding protein 8 (.1) AT3G62340 126 / 9e-34 WRKY ATWRKY68, WRKY68 WRKY family transcription factor (.1) AT4G39410 126 / 1e-33 WRKY ATWRKY13, WRKY13 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) AT2G44745 121 / 1e-32 WRKY WRKY12 WRKY family transcription factor (.1) AT5G13080 116 / 1e-31 WRKY ATWRKY75, WRKY75 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037785 [exp] 432 / 1e-151 AT5G49520 179 / 4e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10004537 [exp] 148 / 5e-42 AT1G29860 188 / 1e-58 WRKY DNA-binding protein 71 (.1) Lus10004612 [exp] 145 / 1e-40 AT1G29860 188 / 3e-58 WRKY DNA-binding protein 71 (.1) Lus10036891 [exp] 138 / 1e-37 AT1G69310 220 / 5e-70 WRKY DNA-binding protein 57 (.1.2) Lus10037094 [exp] 137 / 4e-37 AT1G69310 209 / 1e-65 WRKY DNA-binding protein 57 (.1.2) Lus10012547 [exp] 122 / 6e-34 AT5G13080 172 / 2e-56 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10036401 [exp] 120 / 4e-32 AT1G64000 170 / 1e-54 WRKY DNA-binding protein 56 (.1) Lus10007906 [exp] 119 / 2e-31 AT1G64000 168 / 6e-54 WRKY DNA-binding protein 56 (.1) Lus10011346 [exp] 116 / 4e-31 AT5G13080 179 / 1e-58 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G147700 [exp] 209 / 3e-64 AT5G49520 182 / 8e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.008G103300 [exp] 191 / 1e-57 AT5G49520 170 / 3e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.002G193000 [exp] 168 / 3e-49 AT2G47260 185 / 3e-56 WRKY DNA-binding protein 23 (.1) Potri.014G118200 [exp] 160 / 4e-46 AT2G47260 190 / 5e-58 WRKY DNA-binding protein 23 (.1) Potri.008G094000 [exp] 149 / 3e-42 AT1G69310 213 / 3e-68 WRKY DNA-binding protein 57 (.1.2) Potri.011G079300 [exp] 148 / 6e-42 AT1G29860 186 / 2e-57 WRKY DNA-binding protein 71 (.1) Potri.010G160100 [exp] 148 / 8e-42 AT1G69310 208 / 4e-66 WRKY DNA-binding protein 57 (.1.2) Potri.001G352400 [exp] 147 / 3e-41 AT1G29860 184 / 1e-56 WRKY DNA-binding protein 71 (.1) Potri.005G203200 [exp] 145 / 2e-40 AT4G18170 187 / 3e-57 WRKY DNA-binding protein 28 (.1) Potri.002G059100 [exp] 143 / 9e-40 AT4G18170 176 / 1e-52 WRKY DNA-binding protein 28 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10017067 pacid=23167422 polypeptide=Lus10017067 locus=Lus10017067.g ID=Lus10017067.BGIv1.0 annot-version=v1.0 ATGGCGAAGAGTAGCGACCAGAAGAATCCGGCAGCGAATAGTTTGCCGTACATGATGACGAGCAGCAGCGGCCAGCTGGAGGAAATGATACAGTCCGGGA GCGCTTTCGCGTCACCTGGAGGATTCTTCTTCGATACTCCGATGATGACTCCAGCTAATAACGGATTCAGCGGATTCATGGAGCTGCTTGATGTCAACGG CGTCGGCGGTGGTCAAGATTTCTCCGGATACTCTTCTTCTCTCTTCGATTTGTTCCAGACTCCGATGTTCCCGCTTTCCACGGTGCCGGATCTGGCCATG GAATCGCTGTCGTCGGAGGTGGTCAACAATCCGGCGACTCCGAACTCGTCTTCGATATCCTCTTCGTCAAACGAGGCCGGGAACAGTAATTATAACAACA ACAAAGTCGGACTTAAAGCTGAAGAAGGAATACTGGAGGAAGAAGACGGAGGAGAAGAAGAGGATGAAGAAAAGAACAGCACCAATAAGAAGCAGCTGAA AGCGAAGAAGAAGCCGCAAAAGAAGCAAAGGGAGCCGAGATTTGCGTTCATGACGAAGAGCGAGGTGGATCACTTGGACGACGGTTACAGATGGAGAAAA TACGGTCAAAAAGCTGTCAAAAACAGCCCCTATCCAAGGAGCTACTACCGTTGCACCAGCGCGGGGTGCGGGGTGAAGAAGAGGGTGGAGAGGTTGCACG ACGACCCCGCGGTGGTCGTGACGACCTACGAAGGTCAGCACGTGCACCCTAGCCCGATTACTCCGAGAGGGAGCTTAATTGGAAGCGGAGGGTTCGGATC AGTGAATTACCTTCCGGATCAGAGTCAGTACCAATTGCAGCAGCATGCTTATAATATGTACACATCAATGCCTTCTCTCCACGTTAGTACTAGTTCTGGT ACTGCCGGTACTAGTACTCCGCCTGGTACAACTACTAGCAGCCCTTGTTCGGCCAGTTTCCTCAACATTAATCAATCACCAGCGGCTAATTTCCTGAGAG ACAATGGGCTACTCCAAGACATTGTGCCGACCGGGACGAAAGTGGTGGTGGAGCCTAAAGAGGAGGAGCAGAGATTTTGA
AA sequence Show only first row Show all	>Lus10017067 pacid=23167422 polypeptide=Lus10017067 locus=Lus10017067.g ID=Lus10017067.BGIv1.0 annot-version=v1.0 MAKSSDQKNPAANSLPYMMTSSSGQLEEMIQSGSAFASPGGFFFDTPMMTPANNGFSGFMELLDVNGVGGGQDFSGYSSSLFDLFQTPMFPLSTVPDLAM ESLSSEVVNNPATPNSSSISSSSNEAGNSNYNNNKVGLKAEEGILEEEDGGEEEDEEKNSTNKKQLKAKKKPQKKQREPRFAFMTKSEVDHLDDGYRWRK YGQKAVKNSPYPRSYYRCTSAGCGVKKRVERLHDDPAVVVTTYEGQHVHPSPITPRGSLIGSGGFGSVNYLPDQSQYQLQQHAYNMYTSMPSLHVSTSSG TAGTSTPPGTTTSSPCSASFLNINQSPAANFLRDNGLLQDIVPTGTKVVVEPKEEEQRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49520	WRKY	ATWRKY48, WRKY4...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10017067 [exp]	0	1
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10002589 [exp]	6.0	0.8867
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022195 [exp]	12.1	0.8976
AT5G36930			Disease resistance protein (TI...		Lus10007825 [exp]	15.2	0.9131
AT1G01800			NAD(P)-binding Rossmann-fold s...		Lus10006895 [exp]	17.0	0.8653
AT5G10530			Concanavalin A-like lectin pro...		Lus10014652 [exp]	18.8	0.8932
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10011841 [exp]	19.0	0.8906
AT2G36320			A20/AN1-like zinc finger famil...		Lus10003246 [exp]	34.9	0.8919
AT3G62420	bZIP	ATBZIP53	basic region/leucine zipper mo...		Lus10025024 [exp]	35.2	0.8821
AT5G03380			Heavy metal transport/detoxifi...		Lus10023924 [exp]	36.5	0.8879
AT1G32130		HNI9, ATIWS1	HIGH NITROGEN INSENSITIVE 9, A...		Lus10035391 [exp]	38.3	0.8819

Compare expression of checked genes

Lus10017067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.