Plant FIBer expression Database

Lus10017068 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G34350 228 / 8e-78 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037786
[exp]
263 / 4e-88 AT4G16270 331 / 8e-112 Peroxidase superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G114800
[exp]
235 / 2e-80 AT1G34350 188 / 6e-62 unknown protein
Potri.019G085500
[exp]
223 / 8e-76 AT1G34350 213 / 6e-72 unknown protein
PFAM info
Representative CDS sequence
>Lus10017068 pacid=23167495 polypeptide=Lus10017068 locus=Lus10017068.g ID=Lus10017068.BGIv1.0 annot-version=v1.0
ATGGATGAGTTGAAATCAGCTATGGACGCACACTTGGACCAGATGGCGGATCTGGTTCAGAAGCTCTCTTCCGAGCTCCGCTCCGGCCTCCAACCCGCTT
ACGAGAATTTCATAGGCTTCTTCCACGCCGTTGACTGGACGGAGCGTTGGTTAATGGGAATGATAGGATTCCATGTGTTGCTGCTGATAATAGCTTTGAT
CACCAGGAGGAAGACTAACTTCCAGATGGGATTGTTCCTTCTTACCTTGGCTGGTGTACGCTTTGCCGAGATCCTGAATGGAATGCTGAGAAGTAACTGG
AGGAGCTTTGCAACCCAGAATTATTTTGACCCGCAAGGACTCTTTCTGTCTGCGGTCTGGTCAGGACCTCTTCTTGTCATTGCGTGCCTCATCCTGATAA
ACACTCTCTTTAACCTCTGCTACCTAATCGTAAGGTGGAAAAGGGCGGAGCTGAGACACCGCGCAAGACTTGATCGTGACAAACAGGAGTAA
AA sequence
>Lus10017068 pacid=23167495 polypeptide=Lus10017068 locus=Lus10017068.g ID=Lus10017068.BGIv1.0 annot-version=v1.0
MDELKSAMDAHLDQMADLVQKLSSELRSGLQPAYENFIGFFHAVDWTERWLMGMIGFHVLLLIIALITRRKTNFQMGLFLLTLAGVRFAEILNGMLRSNW
RSFATQNYFDPQGLFLSAVWSGPLLVIACLILINTLFNLCYLIVRWKRAELRHRARLDRDKQE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G34350 unknown protein Lus10017068
[exp]
0 1
AT2G46170 Reticulon family protein (.1.2... Lus10036405
[exp]
2.4 0.9123
Lus10023559
[exp]
6.4 0.9162
AT5G13490 AAC2 ADP/ATP carrier 2 (.1.2) Lus10019701
[exp]
6.7 0.8816
AT1G77130 PGSIP2, GUX3 glucuronic acid substitution o... Lus10028623
[exp]
6.7 0.8944
AT5G23540 Mov34/MPN/PAD-1 family protein... Lus10031085
[exp]
8.1 0.8911
AT2G46170 Reticulon family protein (.1.2... Lus10041080
[exp]
15.0 0.8725
AT3G01280 VDAC1, ATVDAC1 ARABIDOPSIS THALIANA VOLTAGE D... Lus10030794
[exp]
19.1 0.8931
AT1G04980 ATPDI10, ATPDIL... ARABIDOPSIS THALIANA PROTEIN D... Lus10015160
[exp]
19.1 0.8728
AT1G09630 ATRAB-A2A, ATRA... ARABIDOPSIS RAB GTPASE A2A, RA... Lus10041116
[exp]
19.5 0.8346
AT1G07410 ATRAB-A2B, AtRA... ARABIDOPSIS RAB GTPASE HOMOLOG... Lus10016486
[exp]
20.9 0.8229

Lus10017068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.