Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16270 391 / 6e-136 Peroxidase superfamily protein (.1) AT5G05340 290 / 2e-96 Peroxidase superfamily protein (.1) AT5G66390 285 / 2e-94 Peroxidase superfamily protein (.1) AT2G18150 284 / 5e-94 Peroxidase superfamily protein (.1) AT1G68850 283 / 5e-94 Peroxidase superfamily protein (.1) AT2G35380 281 / 4e-93 Peroxidase superfamily protein (.1.2) AT3G50990 281 / 6e-93 Peroxidase superfamily protein (.1) AT4G36430 279 / 3e-92 Peroxidase superfamily protein (.1) AT2G18140 279 / 4e-92 Peroxidase superfamily protein (.1) AT5G06720 279 / 5e-92 ATPA2 peroxidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037786 [exp] 499 / 6e-178 AT4G16270 331 / 8e-112 Peroxidase superfamily protein (.1) Lus10010634 [exp] 293 / 2e-97 AT1G44970 449 / 5e-159 Peroxidase superfamily protein (.1) Lus10041784 [exp] 289 / 4e-96 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10004163 [exp] 288 / 1e-95 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10009937 [exp] 285 / 1e-94 AT5G05340 347 / 6e-120 Peroxidase superfamily protein (.1) Lus10034207 [exp] 280 / 1e-92 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10040107 [exp] 294 / 4e-92 AT4G18010 638 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10027989 [exp] 277 / 4e-91 AT5G06720 400 / 1e-139 peroxidase 2 (.1) Lus10029065 [exp] 276 / 1e-90 AT5G05340 338 / 2e-115 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G103200 [exp] 471 / 1e-167 AT4G16270 438 / 1e-154 Peroxidase superfamily protein (.1) Potri.005G118700 [exp] 293 / 1e-97 AT5G66390 504 / 0.0 Peroxidase superfamily protein (.1) Potri.001G145800 [exp] 285 / 1e-94 AT2G35380 458 / 6e-163 Peroxidase superfamily protein (.1.2) Potri.007G019300 [exp] 285 / 1e-94 AT5G66390 507 / 0.0 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 279 / 2e-92 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 278 / 4e-92 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.003G214500 [exp] 278 / 5e-92 AT5G19890 422 / 4e-149 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 278 / 7e-92 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.003G214700 [exp] 277 / 4e-91 AT5G06720 459 / 5e-163 peroxidase 2 (.1) Potri.013G156500 [exp] 275 / 9e-91 AT5G05340 441 / 1e-156 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10017069 pacid=23167431 polypeptide=Lus10017069 locus=Lus10017069.g ID=Lus10017069.BGIv1.0 annot-version=v1.0 ATGGCGCCTATGTGGGTGACGGCAATTGTTCTCATAATGATGATAGAGCTAACAACATCAACATCAACTACTGCCACCACCTTGAACAAAACATGCTTGG GAGCTGACATTAGCTTCGATTTGCAATTCCACCTCTACCAAACCAGCTGCCCCGAAGCCGAATCCATCGTCTTCTCTTGGGTCGAATCCGCTATGGCTGT CGACCCAAGGATGGCCGCTTCCCTTCTCCGCCTTCATTTTCACGACTGCTTCGGATGTGACGGGTCTGTGTTGCTGGATGACACGGACACATTCCAAGGA GAAAAGACTGCGCCACCCAACTTGAATTCCCTCAGAGGGTTTGAAGTTATCGATGCGATTAAGTCAGAGATCGAAGCGGTCTGCCCCCAAGTCGTTTCCT GTGCTGACATACTCGCCATTACTGCTCGCGACTCTGTTCTTCTTTCAGGAGGACCGAGCTGGGAAGTTCAAATGGGCAGGAAAGATGGATTAACGGCTAG TAAAGCTGCGGCCACTGCGAACCTCCCGGGGCCGAATTCGACGGTGGTGGCTCTAGTGGCTAGCTTTCAGAACGTTGGCCTCTCTCTCAATGACATGGTC GCCCTCTCCGGGGCGCACACAATTGGTAAAGCAAGGTGCTCGTCCTTCAGCTCGAGATTCCAGGGCGGAGGCCCTGACGTAAATCTGGACTTCGTTCAGT CACTTCAGCAGCTGTGCTCGCAATCTGACGGTGGAAGTGGCGGGCCAACAACGGCGGTGCTGGCTCATCTGGACAATGGGACGCCGATGACGGGAAGTGG CGGCACAAGACCGGCGGTGCTGGCTCATCTGGACAATGGGACGCCGATGACGTTTGACAACCAGTACTACATGAATCTGCTCTCCGGAGAAGGGCTGCTG CCGTCGGATCAGGCACTAACGACGCAAGACGAGGAAACCAGGATGATTGTGGAGTCGTACGTTCAGGATCCTGAGACTTTCTTTCGGGATTTCAGGAACT CTATGCTGAAGATGGGGAGCTTGGTCGGGATCACGGGGAACAGTGGCGAGATTAGGAGGGACTGCCGGAGTGTTAATTAG
AA sequence Show only first row Show all	>Lus10017069 pacid=23167431 polypeptide=Lus10017069 locus=Lus10017069.g ID=Lus10017069.BGIv1.0 annot-version=v1.0 MAPMWVTAIVLIMMIELTTSTSTTATTLNKTCLGADISFDLQFHLYQTSCPEAESIVFSWVESAMAVDPRMAASLLRLHFHDCFGCDGSVLLDDTDTFQG EKTAPPNLNSLRGFEVIDAIKSEIEAVCPQVVSCADILAITARDSVLLSGGPSWEVQMGRKDGLTASKAAATANLPGPNSTVVALVASFQNVGLSLNDMV ALSGAHTIGKARCSSFSSRFQGGGPDVNLDFVQSLQQLCSQSDGGSGGPTTAVLAHLDNGTPMTGSGGTRPAVLAHLDNGTPMTFDNQYYMNLLSGEGLL PSDQALTTQDEETRMIVESYVQDPETFFRDFRNSMLKMGSLVGITGNSGEIRRDCRSVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16270			Peroxidase superfamily protein...		Lus10017069 [exp]	0	1
AT4G29340		PRF4	profilin 4 (.1)		Lus10012935 [exp]	2.2	0.9711
AT4G30030			Eukaryotic aspartyl protease f...		Lus10031450 [exp]	2.4	0.9428
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10039454 [exp]	2.8	0.9355
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003456 [exp]	3.2	0.9711
AT2G31180	MYB	ATMYB14, Myb14a...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10022021 [exp]	3.9	0.9711
AT2G24840	MADS	DIA, AGL61	DIANA, AGAMOUS-like 61 (.1)		Lus10030663 [exp]	4.2	0.9341
AT2G04810			Protein of unknown function (D...		Lus10020538 [exp]	4.5	0.9687
AT3G09290	C2H2ZnF	TAC1	telomerase activator1 (.1)		Lus10021213 [exp]	5.0	0.9670
AT3G19940			Major facilitator superfamily ...		Lus10040991 [exp]	5.2	0.8422
AT1G62510			Bifunctional inhibitor/lipid-t...		Lus10001493 [exp]	5.3	0.8931

Compare expression of checked genes

Lus10017069 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.