Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16280 282 / 6e-87 FCA RNA binding;abscisic acid binding (.1.2.3.4) AT2G47310 188 / 3e-52 flowering time control protein-related / FCA gamma-related (.1) AT1G03457 145 / 1e-37 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G03110 136 / 3e-34 AtRBP-DR1 RNA-binding protein-defense related 1 (.1.2) AT4G00830 89 / 2e-18 LIF2 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT2G18510 85 / 2e-17 EMB2444 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13224 81 / 4e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G40490 74 / 1e-13 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G49760 74 / 2e-13 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT2G23350 73 / 3e-13 PABP4, PAB4 poly(A) binding protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037787 [exp] 858 / 0 AT4G16280 391 / 5e-127 RNA binding;abscisic acid binding (.1.2.3.4) Lus10006304 [exp] 270 / 3e-84 AT4G16280 322 / 7e-106 RNA binding;abscisic acid binding (.1.2.3.4) Lus10005926 [exp] 129 / 2e-31 AT4G03110 548 / 0.0 RNA-binding protein-defense related 1 (.1.2) Lus10041728 [exp] 90 / 5e-19 AT2G18510 436 / 1e-153 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030207 [exp] 81 / 1e-15 AT4G00830 601 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10032124 [exp] 79 / 2e-15 AT5G40490 307 / 3e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10014562 [exp] 78 / 6e-15 AT5G40490 301 / 9e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10002689 [exp] 76 / 3e-14 AT4G00830 591 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Lus10014392 [exp] 75 / 8e-14 AT2G36660 594 / 0.0 poly(A) binding protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G147900 [exp] 363 / 2e-115 AT4G16280 338 / 3e-107 RNA binding;abscisic acid binding (.1.2.3.4) Potri.002G192900 [exp] 246 / 8e-74 AT2G47310 273 / 1e-85 flowering time control protein-related / FCA gamma-related (.1) Potri.014G135540 [exp] 141 / 5e-36 AT4G03110 513 / 0.0 RNA-binding protein-defense related 1 (.1.2) Potri.002G214000 [exp] 139 / 1e-35 AT4G03110 506 / 4e-179 RNA-binding protein-defense related 1 (.1.2) Potri.007G028300 [exp] 88 / 2e-18 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G104500 [exp] 81 / 7e-16 AT4G00830 574 / 0.0 LHP1-Interacting Factor 2, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.005G125300 [exp] 78 / 4e-15 AT2G18510 412 / 3e-144 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G009800 [exp] 79 / 7e-15 AT5G09880 519 / 9e-180 Splicing factor, CC1-like (.1) Potri.009G105300 [exp] 77 / 1e-14 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.001G370300 [exp] 76 / 2e-14 AT3G13224 317 / 1e-106 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0680 [flax] [poplar] WW PF00397 [flax] [poplar] WW WW domain CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10017070 pacid=23167461 polypeptide=Lus10017070 locus=Lus10017070.g ID=Lus10017070.BGIv1.0 annot-version=v1.0 ATGGAGACTCAAACAGCAGAGGAGTTTGGCCACGGCGGGAACAACAACAACAACAACGACGACGACGGACACCAGAACAGTTACAATCAGCTGAATTCCC ACACACAAGACTCCTCGTTCCATAACCACGGTCCCTCTCGTTTCTCCGACGGTCCTCCGCCGACGAATCGTTTCCCTGACAATGGTGAGTGCAACTACGA TCGCCGGAGTCCTAACAACCATCGCGATGGAGGCGTCGTTGCTGCCGGTGCTTTTGACAACCCTCCTCCGCCTAATCCTCATGCTGGCTTTGGCGGCCGT GGAGAAGGTGGATTTCCTCCAGTTCCTAATTACCGAGGGCCACATACGCCATTTTCAGGACATAAACGAAGTCATCATATGCCTGGCAGAGGGGGTTTTT CTGGTGATCGTTTTCGTGGAGGTAGCTTTGCCAAACTTTTCGTTGGATCCATTCCTAGGACAGCTACTGAAGAGGACATTCGACCTCTCTTTGAAAAAGA AGGTAATGTCATTGAGGTTGCCTTGGTCAAAGACAAAAACACTGGTCAGCCGCAAAGTTATTGTTTTGTGAAATATGCAACCTCAGAAGAGGCTGATAGA GCCATAAAAGCCTTGCACAATCAGCACACTCTACCCGGAGGAAGTGGGCCAATTCGGGTCAGATATGCTGATGGCGAGCGAGTTCGCCAAGTTGTAGGAG CAACTGACCACAAGCTGTATGTCCTTTCAATAAACAAACAGGCTACAGAAAAGGAAGTTGAGGAAATTTTTGCTCCATATGGCTGGGTTGAAGAGGTTCA TCTACTGCGTGATGAAATGAATCAGAGTCGTGGACGTGGATTTGTTAGATACACTCGTAGAGATATGGCACTGGAAGCTATAAGTGCTCTAAATGGAGCC TATACCATGAGAGGTTGTAACCAACCGCTAACTGTTCGGTTTGCTGTTGCGAAGAGGCCAAAGGCTGGAGATTCAAGCTTCCCAAGGGGTGGTGGACCTG CTTTTGAAGGCCCAGGTTACGGATCACGATTGCAATGGCCAATGCAAAGATCTGATCATAACTATGGTGAACCTATGGGCGATCACGGCCATCCTAATCC ATGGGGGGCGATTAGTCAGCAAAATATGGGGCCTCCTCCTAATGTTGGTGTTCATGGCCCAGGGAATCAGTTACCTCCGATGTCCGGAGAACCATCGGTG CCTTTCAATCAGAACTTTAATCAGCCACCGCACCAATGCCCACCCACTGGCCATCAAATGCCACCAATGCAGAACTCGTTTCAATCTTCTCAACATTTAC CACCTCCGCTTCCGATAAACCCGCATGCTGCACCATCGTTCCCGAATACACAAATGCCCCATCCTGGTCAGCAGAACATGCCACCTATTCCTGGTCAACC ATTGCCATCACAACAGCTGCATGGTTTCACAGACCCAGCTATTGGTTTGCAATCCCATCTTGGGTCGGGTATGCCTAATCAACCGCTTCAATCTGCTCAT GTTCAGCAGCAGCCTCGATTTTTGCAGCAATCCCCTTCACAGTCAGCTCAGACGTTATCACAGCAGGAGCAACCTCTACAACCAAGCTTACAGCCTTCGC AGCAACCTTTCTCTCAGCCTGCCAGACCACAGTGGACTGGAACGGCACCACAAGTGGGTGCTACTACTCCGGCTTCTACACTACCTACCGATGTGCATTC GTCAACTAAATCTGCTCCAGCTGCCGCTTTGGTAGCACAGCCTGCAACTTCCAATGGAAGTGACTGGTCGGAGCATACTTCTCCTGAAGGAAATAAGTAC TATTACAACTGTGAAACTTGCGAAAGCCGGTGGGAGAAGCCAGCGGAGCTTTCTACAGCTGAACAGCAGCAACAACAGCCTTTAGTTCAAACTCCTCAAG CACAGCAGAACCCTCAAGCTCCATTGCACCAGCAACCGCCACAAGGACAACAGATGCAGTTCCCTCCACAGATGCAGTCACACCACCAACACTAG
AA sequence Show only first row Show all	>Lus10017070 pacid=23167461 polypeptide=Lus10017070 locus=Lus10017070.g ID=Lus10017070.BGIv1.0 annot-version=v1.0 METQTAEEFGHGGNNNNNNDDDGHQNSYNQLNSHTQDSSFHNHGPSRFSDGPPPTNRFPDNGECNYDRRSPNNHRDGGVVAAGAFDNPPPPNPHAGFGGR GEGGFPPVPNYRGPHTPFSGHKRSHHMPGRGGFSGDRFRGGSFAKLFVGSIPRTATEEDIRPLFEKEGNVIEVALVKDKNTGQPQSYCFVKYATSEEADR AIKALHNQHTLPGGSGPIRVRYADGERVRQVVGATDHKLYVLSINKQATEKEVEEIFAPYGWVEEVHLLRDEMNQSRGRGFVRYTRRDMALEAISALNGA YTMRGCNQPLTVRFAVAKRPKAGDSSFPRGGGPAFEGPGYGSRLQWPMQRSDHNYGEPMGDHGHPNPWGAISQQNMGPPPNVGVHGPGNQLPPMSGEPSV PFNQNFNQPPHQCPPTGHQMPPMQNSFQSSQHLPPPLPINPHAAPSFPNTQMPHPGQQNMPPIPGQPLPSQQLHGFTDPAIGLQSHLGSGMPNQPLQSAH VQQQPRFLQQSPSQSAQTLSQQEQPLQPSLQPSQQPFSQPARPQWTGTAPQVGATTPASTLPTDVHSSTKSAPAAALVAQPATSNGSDWSEHTSPEGNKY YYNCETCESRWEKPAELSTAEQQQQQPLVQTPQAQQNPQAPLHQQPPQGQQMQFPPQMQSHHQH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10017070 [exp]	0	1
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10037787 [exp]	1.0	0.9215
AT1G68030			RING/FYVE/PHD zinc finger supe...		Lus10011320 [exp]	2.4	0.8424
AT3G29390		RIK	RS2-interacting KH protein (.1...		Lus10015384 [exp]	2.8	0.8635
AT1G79190			ARM repeat superfamily protein...		Lus10022448 [exp]	4.2	0.8940
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10012885 [exp]	5.1	0.8205
AT2G01130			DEA(D/H)-box RNA helicase fami...		Lus10013479 [exp]	6.6	0.8234
AT5G35930			AMP-dependent synthetase and l...		Lus10009528 [exp]	6.7	0.8867
AT1G03000		PEX6	peroxin 6 (.1)		Lus10009814 [exp]	15.9	0.7829
					Lus10036951 [exp]	16.4	0.7663
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10013111 [exp]	18.0	0.7986

Compare expression of checked genes

Lus10017070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.