Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07910 1548 / 0 ATRNL, RNL, AtRLG1 ARABIDOPSIS THALIANA RNA LIGASE, AtRLG1, RNAligase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037788 [exp] 2165 / 0 AT1G07910 1586 / 0.0 ARABIDOPSIS THALIANA RNA LIGASE, AtRLG1, RNAligase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G083100 [exp] 1649 / 0 AT1G07910 1596 / 0.0 ARABIDOPSIS THALIANA RNA LIGASE, AtRLG1, RNAligase (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017071 pacid=23167423 polypeptide=Lus10017071 locus=Lus10017071.g ID=Lus10017071.BGIv1.0 annot-version=v1.0 ATGCAGAGATTCCTCAGCTCTCTCACAATCGCTCTCCCTTTCTCTTCTTCCTCTTCCAGAGCTTTCTCTCGCCACCCTCTTCCTCTCATTCCTCCTTCCT CTTTCTCATCTTCTTCTCCTCTCCATCCCCCCATGCCTCAGTTGAGCTCCCTCTCATTTAGCGAGTGTGATCTGCAGAAAAGAGGTGGACAGAAGGGACA GGCGTGGAGGCCAAAGAATCACGCAGATAAGTCCTCGTCCGCAGCTATTGATGAAGCTGTCACAAGTAGATTAGCTGATTTGAGTATCGCTGAAAACACT GGACACTCTCATGGTCAATCCTCCTCAAAGCCGCAGTTTGGCAATGCACAACCTGGCCAAAAAACTGTTTGGAAGGCCAAGGCTTATGGTACTGTCAGTG AAGCTACAACTGTCGAAGCTGACAGTACGTCTGTGCAAAACACTGTGACTAATGGCCAGGGAACTGTAGCTGATAAGGCTTCGTCTCCGGATTTGAGCCG ACTGTTTAAGGGAAATCTGTTGGATAATTTTACTGTGGACAACTCGACATATTCCCGCAGCCAAATCAGAGCCACTTTTTATCCTAAATTTGAAAACGAG AAATCTGATCAAGAGATTAGGACGAGGATGATTGAGATGGTGTCTAAAGGGTTAGCGAACATGGAGGTTACTCTCAAACATTCTGGCTCGCTTTTCATGT ATGCTGGCAATAAGGGGGGAGCATATGCGAAAAACAGCTTTGGCAACATATACACGGCCGTTGGTGTCTTCGTTCTTGGCCGAACGTTTCGAGAGGCTTG GGGAACTGCTGCCGCGAAGAAACAAAAAGAGTTCAATGATTTTCTTGAGAGAGAAAATATGTGCATATCAATGGAGCTCGTAACTGCTGTTCTAGGAGAT CACGGGCAGCGGCCCAATGAAGATTATGTGGTGGTGACTGCTGTTACAGAACTGGGCAATGGAAAGCCAAAATTCTACTCAACTCCTGAAGTGATTGCTT TTTGTCGAAAATGGCGCCTCCCCACAAATCATATTTGGTTGTTCTCAACAAGGAAATCTGCAACGTCTTTTTTCGCTGCCTTTGATGCACTTTGCGAAGA AGGAACAGCTACTACTGTTTGCAGGACACTTGATGAAGTTGCTGATATATCTGTCCCAGGTTCGCTAGACCATATAAAGGCACAAGGTGAAATCGTGGAG GGTTTAGTGGCTCGTATTGTACCTCATGAGAGCTCAAAACATATGGAGGGTGTCTTGAAAGAAAATCCTCTTCCACCGATGGATGAAGCTGGCACTTATT TGGGACCAAGCCTGCGGGAAATTTGCGCTGCAAATAGGTCAGATGAAAAACAACAAATAAAAGCACTCCTCCAAAGTGTTGGCCCTTCTTTTTGCCCCGA GTCTGTAGACTGGTTTGGAATTCATTCTAGTGAGGCACATTCAAGAAATGCCGACAGATCTGTGGTTACAAAATTTTTGCAAGCTTGCCCTGCTGACTAT CAGACCACTAAAGTGCAGGAAGTTATCCGTCTGCTGAGAGAAAGACGCTTACCTGCTGCTTTTAAATGTTATCATAACTTCCACAAAATTGACGCCATTA CGAAAGATAACCTCTGCTACAGAATGGTTGTCCATGTGCATAGTGATTCAGCTTTTCGCCGATATCAAAAGGAGATGAGGCACAAGCCTGAGTTGTGGCC ATTATATCGAGGTTTTTTCATTGACATCAATCTCTTCAAGGCGAACACAAAGAAAGCTACTGAAATTGTGGAAAACAAAGACAGCAAATTGGGAAATGAA AATGGAGTTGGATTAGCGAAAGACAGCCTTGCTGATGATGATGCAAATCTGATGATCAAACTAAAATTTCTTACATACAAGTTGAGAACGTTTTTAATTC GTAATGGGTTGTCAGTTCTTTTCAAGGACGGTCCAGCTGCTTATAGGACTTACTACCTAAGGCAAATGAAAATTTGGGGCACTTCAGCAGAAAAGCAGAG GGAACTTAGCAAGATGCTTGATGAATGGGCTATCCATATCCGTCGGAAATGTGGCAGAAAGCAGTTGTCATCTTCAATATATCTTAGTGAAGCTGAGCCT TTCCTCGAACAGTATGCAAAACGCAGTCCGACAAACCAGGCTCTGATCGGATCTGCTGGAAGTTTAGTAAGGGCTGAAGATTTTATGGCTATCATAGAAG GTGGTAGGGACGAAGAAGGTGATATTGATAGAGAAAGAGAGGTGGAACCTCCTAGTCCTAGTTCACCAGTCCAGGAAGCTGTCCATAAGGATGAGGGTTT GATTATCTTCTTTCCAGGAATACCTGGTTGTGCGAAATCTGCACTTTGCAAAGAGATATTGAGTTCTCCTGAAGGGCTTGGGGACGATCGCCCAGTTCAC AGTTTGATGGGTGATCTCATTAAAGGGAGGTACTGGCAAAAGGTTTCTGAAGATCGCCGGAAGAAACCTTACTCTATAATGCTTGCTGACAAGAATGCAC CAAATGAAGAAGTCTGGAGACAGATTGAACAAATGTGCAAATCCACCCGAGCTTCTGCCATCCCAGTAATACCAGATTCTGAAGGAACTATATCGAATCC GTTTTCACTTGATGCATTAGCTGTTTTCATCTTCCGTGTGCTTCAACGAGTTAATCACCCGGGTAACTTGGATAAAGCATCTCCAAACGCTGGTTATGTG CTCCTAATGTTTTATCACCTTTATGAGGGGAAGAGTCGGAGCGAGTTTGAGGACGAGTTAGTCGAACGCTTTGGATCCCTTGTAAAGATGCCATTGCTTA AATCAGAAAGGAGTCCTCTGCCGGATTCGGTCAGATCAATTTTGGAAGAGGGAATAAGCCTATACGATCTTCACAGAAGCAGACATGGAAGGTTGGAGTC AACAAAGGGTACATACACAAAAGAGTGGGCCAAATGGGAGAAGCAGCTAAGAGACACTCTTTCTGCGGCTTCTGAGTATCTCACTTCCATTCAGGTTCCA TTTGATTATGCTGTTCAACAAGTACTGGAGCAGCTTAAGAGCATTGCCAAGAAAGAATACAGAACCCCAACAAGTACGGGAAGGAGGGCATTAGGAACTA TTGTTTTTGCTGCTGTTAGTTTACAAGTCTCAGAAATCTCCAGCTTCCTTGATGATCTAGCGCAGAAGAACCCCGAGGCCGAACTGTTTCTCAAGGACAA GGACTTGGCACAAAACCTTCAAAGGGCTCACGTGACTCTAGCTCACAAGAGAAGTCATGGTGTCACAGCAGTAGCTAAATTCGGACAATTTGTCCACCGA AACGTTCCGGTGGAGTTCACCGCATTTTTCTTCACCGACAAAATGGCTGCACTAGAAGCACAGGTCGGGTCGGTGGATGGCGAGAAAATCGAATCAAAGA ACGAATGGCCCCATGTCACTCTATGGACAGCACAGGGCATTCCACCTAGGGAGGCAAACGCACTGCGGAAATTGCATTCCGATGGGAAGGCTACACGAGT TGAAATCAATCCGCCAGTAACGCTTTCCGGAACTGTTGAGTTCTTCTGA
AA sequence Show only first row Show all	>Lus10017071 pacid=23167423 polypeptide=Lus10017071 locus=Lus10017071.g ID=Lus10017071.BGIv1.0 annot-version=v1.0 MQRFLSSLTIALPFSSSSSRAFSRHPLPLIPPSSFSSSSPLHPPMPQLSSLSFSECDLQKRGGQKGQAWRPKNHADKSSSAAIDEAVTSRLADLSIAENT GHSHGQSSSKPQFGNAQPGQKTVWKAKAYGTVSEATTVEADSTSVQNTVTNGQGTVADKASSPDLSRLFKGNLLDNFTVDNSTYSRSQIRATFYPKFENE KSDQEIRTRMIEMVSKGLANMEVTLKHSGSLFMYAGNKGGAYAKNSFGNIYTAVGVFVLGRTFREAWGTAAAKKQKEFNDFLERENMCISMELVTAVLGD HGQRPNEDYVVVTAVTELGNGKPKFYSTPEVIAFCRKWRLPTNHIWLFSTRKSATSFFAAFDALCEEGTATTVCRTLDEVADISVPGSLDHIKAQGEIVE GLVARIVPHESSKHMEGVLKENPLPPMDEAGTYLGPSLREICAANRSDEKQQIKALLQSVGPSFCPESVDWFGIHSSEAHSRNADRSVVTKFLQACPADY QTTKVQEVIRLLRERRLPAAFKCYHNFHKIDAITKDNLCYRMVVHVHSDSAFRRYQKEMRHKPELWPLYRGFFIDINLFKANTKKATEIVENKDSKLGNE NGVGLAKDSLADDDANLMIKLKFLTYKLRTFLIRNGLSVLFKDGPAAYRTYYLRQMKIWGTSAEKQRELSKMLDEWAIHIRRKCGRKQLSSSIYLSEAEP FLEQYAKRSPTNQALIGSAGSLVRAEDFMAIIEGGRDEEGDIDREREVEPPSPSSPVQEAVHKDEGLIIFFPGIPGCAKSALCKEILSSPEGLGDDRPVH SLMGDLIKGRYWQKVSEDRRKKPYSIMLADKNAPNEEVWRQIEQMCKSTRASAIPVIPDSEGTISNPFSLDALAVFIFRVLQRVNHPGNLDKASPNAGYV LLMFYHLYEGKSRSEFEDELVERFGSLVKMPLLKSERSPLPDSVRSILEEGISLYDLHRSRHGRLESTKGTYTKEWAKWEKQLRDTLSAASEYLTSIQVP FDYAVQQVLEQLKSIAKKEYRTPTSTGRRALGTIVFAAVSLQVSEISSFLDDLAQKNPEAELFLKDKDLAQNLQRAHVTLAHKRSHGVTAVAKFGQFVHR NVPVEFTAFFFTDKMAALEAQVGSVDGEKIESKNEWPHVTLWTAQGIPPREANALRKLHSDGKATRVEINPPVTLSGTVEFF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07910		ATRNL, RNL, AtR...	ARABIDOPSIS THALIANA RNA LIGAS...		Lus10017071 [exp]	0	1
AT1G14780			MAC/Perforin domain-containing...		Lus10034586 [exp]	1.7	0.8340
AT5G58410			HEAT/U-box domain-containing p...		Lus10042236 [exp]	2.2	0.8447
AT5G25480		AtDNMT2, DNMT2	DNA METHYLTRANSFERASE 2, DNA m...		Lus10020155 [exp]	2.4	0.8277
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Lus10004119 [exp]	5.7	0.8384
AT1G61140		EDA16	embryo sac development arrest ...		Lus10011211 [exp]	6.3	0.8281
AT5G21160			LA RNA-binding protein (.1.2.3...		Lus10037431 [exp]	6.9	0.8088
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10024063 [exp]	7.9	0.8259
AT1G55750			BSD domain (BTF2-like transcri...		Lus10020465 [exp]	8.5	0.8162
AT3G19780			unknown protein		Lus10040970 [exp]	10.2	0.8080
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040532 [exp]	15.5	0.8128

Compare expression of checked genes

Lus10017071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.