Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06580 648 / 0 GAL1, GALK GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) AT3G42850 59 / 5e-09 Mevalonate/galactokinase family protein (.1) AT4G16130 59 / 7e-09 ATISA1, ARA1 arabinose kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037789 [exp] 849 / 0 AT3G06580 765 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10002740 [exp] 730 / 0 AT3G06580 728 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10023094 [exp] 598 / 0 AT3G06580 635 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10016320 [exp] 454 / 1e-158 AT3G06580 496 / 6e-176 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10016321 [exp] 395 / 8e-137 AT3G06580 338 / 8e-115 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Lus10026983 [exp] 53 / 4e-07 AT4G16130 1013 / 0.0 arabinose kinase (.1) Lus10020178 [exp] 51 / 2e-06 AT4G16130 625 / 0.0 arabinose kinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G148100 [exp] 719 / 0 AT3G06580 792 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Potri.008G102800 [exp] 712 / 0 AT3G06580 793 / 0.0 GALACTOSE KINASE 1, Mevalonate/galactokinase family protein (.1) Potri.018G145700 [exp] 66 / 5e-11 AT4G16130 1435 / 0.0 arabinose kinase (.1) Potri.018G003100 [exp] 52 / 1e-06 AT4G16130 1660 / 0.0 arabinose kinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0677 [flax] [poplar] GHMP_C PF08544 [flax] [poplar] GHMP_kinases_C GHMP kinases C terminal CL0329 [flax] [poplar] S5 PF10509 [flax] [poplar] GalKase_gal_bdg Galactokinase galactose-binding signature CL0329 [flax] [poplar] S5 PF00288 [flax] [poplar] GHMP_kinases_N GHMP kinases N terminal domain
Representative CDS sequence Show only first row Show all	>Lus10017072 pacid=23167412 polypeptide=Lus10017072 locus=Lus10017072.g ID=Lus10017072.BGIv1.0 annot-version=v1.0 ATGGCGGCGAAACGCAATGAGCTCCCCCTCCCAATCCCGATCTTCTCCTCTCTCGATCCAGTCTACGGCGGTTCTCAGCTCGAAGAAACTCAGCTCCGGT TCGACAACTTGAAGTCCAAGTTCCTCCAAGTATTCGGCCATCCGCCTGACGTCTACGCTCGCTCTCCAGGGAGAGTGAATTTAATCGGGGAGCACATTGA TTACGAAGGATACTCGGTGCTACCAATGGCAATTCGGCAGGATACGATCGTCGCGATCCGTAAGCGCTCTCCTTCAGAAACGGAGAAGCTTATTCGGATT GCAAATGTTAACGAGAAGTATACAACGTGCACTTACCCTGCGGATCCTAACCAGGAAATTGACTTGAAAAATCACAGATGGGGTCATTATTTTATCTGCG GGTATATAGGTTTTTATGAATACGCCAAAGAGAAAGGGATCAATGTTGGTATTCCAGTTGGGCTTGATGTTATGATTGATGGAACTGTTCCAACTGGTTC CGGACTTTCTAGCTCTGCTGCATTTGTTTGCTCATCTACCATAGCAATTATGGCTGCGTTTGGTGTCAGCCTCCCAAAGAAAGAAGTTGCTCAGCTGACT TGTGATTGTGAAAGGCACATAGGAACTCAATCTGGAGGAATGGATCAGGCGATCTCTGTTATGGCTAAGGCTGGATTTGCTGAACTTATTGATTTCAATC CTGTTCGAGCAACTGATGTTCATCTTCCTGATGGGGGAACTTTTGTGATTGCACATTCTTTGGCTAATTCTGAGAAGGCTGTCACTGCTGCGACTAACTA CAATAACAGAGTTGTTGAATGCCGCTTAGCTGCTATCATGCTCGGAATTAAGCTGGGAATGAAACCAGAGAAGGCTACATCAAAAGTCAAAACTCTTTCC GATGTAGAGGGGTTATGTGTATCTTTTTCCGAAAAACATGGTTCATCAGATCCTGTTATGGCTGTTAAGCCTCCTCATCATTTTAGATCATTGTTGTATC CCAATGCTGCAGGAATTTTTGAAAGAAGAACCATATACAGCGGAGGTATCGAGAACATAACTGGACAGAAGCTGACATCCTTACTTAGCAGTTCTGCTTC TTCATTGGAGGTTCTAAAGGCAGCTAAGCACTTCAAGTTGCATCAGAGGGCAGTTCATGTTTACTCAGAGGCCAAGCGAGTGCATGCTTTTAAAGATACC GTGTTGGCAAAACTCAATGATGATGACAAGCTTAAGAAACTAGGTGAGCTAATGAATGACAGCCACCACAGCTGCAGTGTGCTATACGAATGCAGCTGCC TGGAGCTGGAAGAGCTCGTAAAAGTCTGCCGCGAGAATGGAGCATTGGGGGCTAGACTTACAGGAGCTGGATGGGGCGGTTGTGCAGTTGTATTGGTGAA GGAAGCCATTGTCCCACAGTTCATCCTAAATTTGAAGGACAAATTCTACCAGTCGAGAATAGAGAAAGGTGTGATAAACAAGTCGGAACTTGGGCTCTAT GTGTTTGCTTCAAAGCCTTCAAGCGGCGCTGCTATTTTCAAGTTCTAG
AA sequence Show only first row Show all	>Lus10017072 pacid=23167412 polypeptide=Lus10017072 locus=Lus10017072.g ID=Lus10017072.BGIv1.0 annot-version=v1.0 MAAKRNELPLPIPIFSSLDPVYGGSQLEETQLRFDNLKSKFLQVFGHPPDVYARSPGRVNLIGEHIDYEGYSVLPMAIRQDTIVAIRKRSPSETEKLIRI ANVNEKYTTCTYPADPNQEIDLKNHRWGHYFICGYIGFYEYAKEKGINVGIPVGLDVMIDGTVPTGSGLSSSAAFVCSSTIAIMAAFGVSLPKKEVAQLT CDCERHIGTQSGGMDQAISVMAKAGFAELIDFNPVRATDVHLPDGGTFVIAHSLANSEKAVTAATNYNNRVVECRLAAIMLGIKLGMKPEKATSKVKTLS DVEGLCVSFSEKHGSSDPVMAVKPPHHFRSLLYPNAAGIFERRTIYSGGIENITGQKLTSLLSSSASSLEVLKAAKHFKLHQRAVHVYSEAKRVHAFKDT VLAKLNDDDKLKKLGELMNDSHHSCSVLYECSCLELEELVKVCRENGALGARLTGAGWGGCAVVLVKEAIVPQFILNLKDKFYQSRIEKGVINKSELGLY VFASKPSSGAAIFKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10017072 [exp]	0	1
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Lus10034413 [exp]	3.6	0.7367
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Lus10024179 [exp]	7.1	0.6834
					Lus10008068 [exp]	9.1	0.7009
AT2G07680		ATMRP11, ABCC13	ATP-binding cassette C13, mult...		Lus10041661 [exp]	12.1	0.6953
AT3G06580		GAL1, GALK	GALACTOSE KINASE 1, Mevalonate...		Lus10037789 [exp]	21.8	0.6679
AT2G17280			Phosphoglycerate mutase family...		Lus10032820 [exp]	22.5	0.6206
AT1G68920	bHLH	bHLH049, ACE1	basic helix-loop-helix (bHLH) ...		Lus10013052 [exp]	26.8	0.6847
					Lus10032489 [exp]	31.7	0.5743
AT5G65470			O-fucosyltransferase family pr...		Lus10012732 [exp]	33.9	0.6344
AT3G05740		RECQI1	RECQ helicase l1 (.1)		Lus10042451 [exp]	38.4	0.6337

Compare expression of checked genes

Lus10017072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.