Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17120 76 / 2e-16 unknown protein AT4G01960 69 / 8e-14 unknown protein AT1G02380 60 / 2e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037790 [exp] 338 / 5e-118 AT3G17120 112 / 5e-30 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G148200 [exp] 114 / 2e-30 AT3G17120 108 / 5e-29 unknown protein Potri.008G102700 [exp] 101 / 2e-25 AT3G17120 112 / 1e-30 unknown protein Potri.014G118000 [exp] 57 / 8e-10 AT4G01960 88 / 2e-21 unknown protein Potri.002G192700 [exp] 44 / 4e-05 AT4G01960 52 / 4e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017073 pacid=23167493 polypeptide=Lus10017073 locus=Lus10017073.g ID=Lus10017073.BGIv1.0 annot-version=v1.0 ATGGAGGATAATAGTAATACCGCATCTACCGGGAGAGGCTTCTACGTTGATCTAGAAAGCGGACCTAACAATTCCAGGGCTGCGGACGCTTCAGCTTCTT CCACCAATGGCGTCTCCACATATTCCGGGGTCAGATCGTTGTTCAACAAGGTATGCAGCGTGTTTGGGGCTTTTGATGGGGTTTCATCAGCAGACGATTT GCAGCAATCCTTATGTGGGAATTCAGGCGGGGAGCAAGCGAAATCGGAAGGTGTTAATAATGAGGTTGGTAGTGGTAGTGATCATTCGGAGAAGCAGCAG CAGCGTAGGAAGAGCAGCAGCCCACATAAGAAATCACCCAAGCCACCAAGGCCACCTCGTGGCCCTTCATTGGATGCTGCTGATATCAAGCTCATCAAGG AGATTTCCGAGCTTGCCATGTTGAAGCGTGCCAGGATCGAGCGGATTAAGGCGTTAAAGAAGGCGAAAGCTGCCAAGGCATCATCGGCTTCTTCGACTGG CAATCTGTTTGCCATGGTGTTCACTGTTCTCTTCTTCCTGGTTATCATCTGTCAAGGAATGTCATCAAGAATTACAGCCATAGAGCTAAATACAGCACCA GAGCCAGCAAGAACAATGGACAACAACGAGCTAATTTCTGTTCAGTACTTTGGAAACCCTTCTGTAAATAGCCCTATTGGTTTACAATCCGGGTCTCACA ATCCTGAGACTGATAGAATTAGTTGTGCCGGTGGTTTTATCACCGGATCAATGGAGGGAAAGAAAAAAGAGAAGGAGAAAGGTGGTGATGTTAGTCCAGT GATCCTGATAGGGCAGGGCAGGCTCTATGTATTGTGA
AA sequence Show only first row Show all	>Lus10017073 pacid=23167493 polypeptide=Lus10017073 locus=Lus10017073.g ID=Lus10017073.BGIv1.0 annot-version=v1.0 MEDNSNTASTGRGFYVDLESGPNNSRAADASASSTNGVSTYSGVRSLFNKVCSVFGAFDGVSSADDLQQSLCGNSGGEQAKSEGVNNEVGSGSDHSEKQQ QRRKSSSPHKKSPKPPRPPRGPSLDAADIKLIKEISELAMLKRARIERIKALKKAKAAKASSASSTGNLFAMVFTVLFFLVIICQGMSSRITAIELNTAP EPARTMDNNELISVQYFGNPSVNSPIGLQSGSHNPETDRISCAGGFITGSMEGKKKEKEKGGDVSPVILIGQGRLYVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17120			unknown protein		Lus10017073 [exp]	0	1
AT2G29660	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10018219 [exp]	1.0	0.9120
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10026345 [exp]	7.4	0.8788
AT3G07210			unknown protein		Lus10025908 [exp]	8.3	0.8852
AT2G47930		AGP26, ATAGP26	ARABIDOPSIS THALIANA ARABINOGA...		Lus10005932 [exp]	13.5	0.8613
AT1G63850			BTB/POZ domain-containing prot...		Lus10028772 [exp]	17.0	0.8784
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Lus10043003 [exp]	17.5	0.8840
AT3G05520			Subunits of heterodimeric acti...		Lus10020651 [exp]	17.8	0.8015
AT5G40140			RING/U-box superfamily protein...		Lus10039470 [exp]	18.8	0.8079
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Lus10032505 [exp]	19.3	0.8762
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10028922 [exp]	19.8	0.8537

Compare expression of checked genes

Lus10017073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.