Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17130 117 / 4e-33 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G47960 57 / 3e-10 ATC/VIF1, C/VIF1 cell wall / vacuolar inhibitor of fructosidase 1 (.1) AT5G64620 47 / 2e-06 ATC/VIF2, C/VIF2 cell wall / vacuolar inhibitor of fructosidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037791 [exp] 313 / 2e-110 AT3G17130 131 / 8e-39 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10016319 [exp] 176 / 4e-56 AT3G17130 151 / 8e-47 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10002739 [exp] 170 / 5e-54 AT3G17130 153 / 1e-47 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10003530 [exp] 71 / 3e-15 AT1G47960 91 / 5e-23 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10002933 [exp] 71 / 4e-15 AT1G47960 89 / 3e-22 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10016318 [exp] 59 / 5e-11 AT1G47960 115 / 2e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10027947 [exp] 58 / 2e-10 AT1G47960 111 / 1e-30 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10000822 [exp] 57 / 4e-10 AT1G47960 113 / 1e-31 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10016317 [exp] 55 / 2e-09 AT1G47960 115 / 2e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G102600 [exp] 147 / 5e-45 AT3G17130 153 / 1e-47 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.009G083500 [exp] 72 / 5e-16 AT1G47960 114 / 7e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.010G063000 [exp] 65 / 4e-13 AT1G47960 137 / 3e-41 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.005G007100 [exp] 47 / 8e-07 AT1G09360 85 / 6e-21 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.007G108301 [exp] 44 / 2e-05 AT5G64620 163 / 1e-51 cell wall / vacuolar inhibitor of fructosidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10017074 pacid=23167486 polypeptide=Lus10017074 locus=Lus10017074.g ID=Lus10017074.BGIv1.0 annot-version=v1.0 ATGACAATCTCATTCACTCGTAAAATCCCTGTCCTATCACTAACCATTCTCTGCATCATCATTCCGACCGGCAGCGTCCAATCCACCGACGATCAAAATC TGATCGACCAAGTATGCAAGAAGACCCCTTTCTACCGCCTCTTTCCCGACACTCTGCATTCTTCCGCCGCCAACACCACCACCACCTCAAAAGACGTCAA GGGGATAGCTTCCAAGTTCAACGACGTCGTACTGTCGAACGCCACGGAGATGCTGGATTACATCCAGGGGAAGCTGAAGATCGCTGAGGATCCTAAGATA GAGAAAGCTCTGGCGAATTGTGCGGAGCTCTACATTCCGGTGGTGAAGTACAATCTGCCTCAGGGGATCGACGCTTTCCTCAGGGGTTACTATGGCTTCA CCAGGTACGCTTTCTCCGAGGCCGGAGATCAGGCAGACGCATGTGAGGGTAAATTTTCTGGCGGCGGCGGCGGAGGAGATGAGGTTAGTGCGAGGAGTAA GGTGGGGAGTGAGTTGTGCGATGTTGCGGCGGCGATTGTTGGATTGTTGATCAAAGGCCGCAGATTTGTTAATCTCGTGTAA
AA sequence Show only first row Show all	>Lus10017074 pacid=23167486 polypeptide=Lus10017074 locus=Lus10017074.g ID=Lus10017074.BGIv1.0 annot-version=v1.0 MTISFTRKIPVLSLTILCIIIPTGSVQSTDDQNLIDQVCKKTPFYRLFPDTLHSSAANTTTTSKDVKGIASKFNDVVLSNATEMLDYIQGKLKIAEDPKI EKALANCAELYIPVVKYNLPQGIDAFLRGYYGFTRYAFSEAGDQADACEGKFSGGGGGGDEVSARSKVGSELCDVAAAIVGLLIKGRRFVNLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17130			Plant invertase/pectin methyle...		Lus10017074 [exp]	0	1
AT4G39510		CYP96A12	"cytochrome P450, family 96, s...		Lus10018159 [exp]	2.8	0.8213
AT4G16490			ARM repeat superfamily protein...		Lus10017563 [exp]	6.2	0.8525
					Lus10041371 [exp]	6.5	0.8448
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10041372 [exp]	6.8	0.8471
AT3G21150	CO	EIP6, BBX32	EMF1-Interacting Protein 1, B-...		Lus10034830 [exp]	10.8	0.8320
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Lus10029634 [exp]	14.7	0.8055
AT4G16490			ARM repeat superfamily protein...		Lus10017562 [exp]	16.6	0.8309
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10030336 [exp]	16.7	0.8219
AT3G18750		ZIK5, WNK6, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Lus10030229 [exp]	17.1	0.8026
AT3G18490			Eukaryotic aspartyl protease f...		Lus10032482 [exp]	22.7	0.8264

Compare expression of checked genes

Lus10017074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.