Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17152 72 / 3e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G17150 61 / 7e-12 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G17220 57 / 2e-10 ATPMEI2 pectin methylesterase inhibitor 2 (.1) AT5G64620 52 / 1e-08 ATC/VIF2, C/VIF2 cell wall / vacuolar inhibitor of fructosidase 2 (.1) AT1G47960 49 / 2e-07 ATC/VIF1, C/VIF1 cell wall / vacuolar inhibitor of fructosidase 1 (.1) AT3G17130 44 / 1e-05 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G17230 44 / 2e-05 invertase/pectin methylesterase inhibitor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037793 [exp] 267 / 2e-91 AT3G17152 74 / 5e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10016317 [exp] 63 / 2e-12 AT1G47960 115 / 2e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10016318 [exp] 62 / 5e-12 AT1G47960 115 / 2e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10000822 [exp] 62 / 5e-12 AT1G47960 113 / 1e-31 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10027947 [exp] 61 / 1e-11 AT1G47960 111 / 1e-30 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10002738 [exp] 57 / 4e-10 AT1G47960 67 / 5e-14 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10041650 [exp] 55 / 2e-09 AT1G48020 85 / 4e-21 ARABIDOPSIS THALIANA PECTIN METHYLESTERASE INHIBITOR 1, pectin methylesterase inhibitor 1 (.1) Lus10003530 [exp] 54 / 4e-09 AT1G47960 91 / 5e-23 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Lus10002933 [exp] 50 / 5e-08 AT1G47960 89 / 3e-22 cell wall / vacuolar inhibitor of fructosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G083500 [exp] 67 / 3e-14 AT1G47960 114 / 7e-32 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.010G209800 [exp] 65 / 3e-13 AT5G64620 93 / 5e-24 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.010G063000 [exp] 62 / 4e-12 AT1G47960 137 / 3e-41 cell wall / vacuolar inhibitor of fructosidase 1 (.1) Potri.008G102600 [exp] 49 / 1e-07 AT3G17130 153 / 1e-47 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.002G191500 [exp] 49 / 2e-07 AT2G31430 104 / 2e-28 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.008G013400 [exp] 47 / 1e-06 AT5G64620 66 / 8e-14 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.007G068300 [exp] 46 / 2e-06 AT4G00872 113 / 4e-32 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G122000 [exp] 46 / 2e-06 AT5G64620 53 / 7e-09 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.006G134900 [exp] 45 / 4e-06 AT5G64620 76 / 2e-17 cell wall / vacuolar inhibitor of fructosidase 2 (.1) Potri.001G109700 [exp] 45 / 5e-06 AT1G47960 46 / 2e-06 cell wall / vacuolar inhibitor of fructosidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10017077 pacid=23167434 polypeptide=Lus10017077 locus=Lus10017077.g ID=Lus10017077.BGIv1.0 annot-version=v1.0 ATGAAGATGCACAAGATTTCCACCCTCCTCCTCTTCTTCATCCCTCTCTTCCTTCACAAAGCAACGGGCGATCTGGCGTTGCTCGAAAAGACCTGCAAGA GCAGCAGCAACTACACGCTCTGCTTCGCATCCCTCCAATCCGACCCTCGAACCGCAAAGGCTGCTGACGTCAAAGGGCTGGCTTCGATCGAGCTGGACAT CACCTTGGCTAAGGCCAATGTCGCATTAGACCATGTTGCTAATTTGTTTAGGAATGCGACTGACCCGTATTTGTACCGTGCGTACGGGACCTGTGTCGAG GAGTTTAGAGGAGCGGTCGCAGGTGCGGACTCCAGCCTTGCCGGTTCGATCTCTGGTTTGAAATCGGGGGATTATGCTGCGGCGAAGAGTGGGCTTGAGC GCACCAAGGCCCATGTAGAGATGTGTCTGGAAGGGTTGGCGGGTGATAAGGGGCCGTTTACTGATGAGGCCCAGCTCGTGGATGGGCTGTCAAGTGTGGC TATTAGCATCATTAGTTTGTTGCATTGA
AA sequence Show only first row Show all	>Lus10017077 pacid=23167434 polypeptide=Lus10017077 locus=Lus10017077.g ID=Lus10017077.BGIv1.0 annot-version=v1.0 MKMHKISTLLLFFIPLFLHKATGDLALLEKTCKSSSNYTLCFASLQSDPRTAKAADVKGLASIELDITLAKANVALDHVANLFRNATDPYLYRAYGTCVE EFRGAVAGADSSLAGSISGLKSGDYAAAKSGLERTKAHVEMCLEGLAGDKGPFTDEAQLVDGLSSVAISIISLLH

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17152			Plant invertase/pectin methyle...		Lus10017077 [exp]	0	1
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10028845 [exp]	1.7	0.7312
AT1G55790			Domain of unknown function (DU...		Lus10032900 [exp]	7.1	0.7281
					Lus10031263 [exp]	7.3	0.6718
AT5G04885			Glycosyl hydrolase family prot...		Lus10005706 [exp]	7.7	0.7212
					Lus10039943 [exp]	8.7	0.7245
AT2G23945			Eukaryotic aspartyl protease f...		Lus10019961 [exp]	12.0	0.6942
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10017997 [exp]	13.0	0.7007
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10005284 [exp]	14.0	0.6931
AT2G26490			Transducin/WD40 repeat-like su...		Lus10016289 [exp]	14.3	0.7007
AT5G09360		LAC14	laccase 14 (.1)		Lus10036070 [exp]	15.4	0.7007

Compare expression of checked genes

Lus10017077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.