Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49525 54 / 8e-10 unknown protein AT5G26790 47 / 3e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037793 [exp] 138 / 3e-40 AT3G17152 74 / 5e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10015445 [exp] 66 / 2e-14 ND 49 / 2e-09 Lus10011181 [exp] 62 / 9e-13 AT5G49525 50 / 5e-10 unknown protein Lus10014255 [exp] 53 / 3e-08 AT4G35890 91 / 5e-20 winged-helix DNA-binding transcription factor family protein (.1) Lus10020752 [exp] 38 / 0.001 AT1G06475 51 / 2e-09 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G148300 [exp] 97 / 4e-26 AT5G49525 57 / 2e-12 unknown protein Potri.008G102400 [exp] 76 / 2e-18 AT5G49525 53 / 4e-11 unknown protein Potri.005G011400 [exp] 60 / 8e-12 AT5G49525 49 / 6e-09 unknown protein Potri.013G007500 [exp] 53 / 3e-09 AT5G49525 47 / 4e-08 unknown protein Potri.004G131200 [exp] 44 / 5e-06 AT5G46295 / unknown protein Potri.011G079900 [exp] 37 / 0.001 AT5G46295 57 / 3e-12 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017078 pacid=23167454 polypeptide=Lus10017078 locus=Lus10017078.g ID=Lus10017078.BGIv1.0 annot-version=v1.0 ATGGTTTCCCAACATTTTGTACAGTCATTTCCGTCGTCAGGTGGCGGAGCTTCTATTTCTCTTCCTCCGCTCCGTCGCCCCCTCCCAGCCCTCTTGGTCC CACCAACGTACCCGCTCTACAAAGTCAACGTGGATGGAGCCGTTCATTCAGGCGTCGGAGGCTCGACTTGTTGGGTCCTCATGGAAGCCACGGGGGCCGT CCTCCACGCTGTCGGCACACCTTACCCCGGGGATAAACTCCATCATCTCTCGCAGATCGTTTCTTTCTTCCCCACTAGAGATAAACACGGCGGACTCCAC CACCGACGACGACCGGAGCTGAAACCTCAAGGAACTCGACCGAGCAGCTCTTTCGAATTCCCGTCCTCTAGACGGGCCCCAGCAGAGAAATGGCTCCTGG GTCCGATCGAGCAGAAGAAGAAGAGGTGGCCGGAGCTCGGCCTCTCTTTGCCGACATCTAGCTTTCGATGGCCGGACATCGACCTCTCGTGGCGGCGGTG GAGCCAGCCTAGCTTACGGTGGCTGGAGTTCTCGATCGACGAGGTGCTGTGGAGCTTGGTGACGGCGGTTGAATCCATCGCTCTCGTAACTATGCTCTGC TACTTCTTCGTCTTCTGTGGATGCACTCTGTGA
AA sequence Show only first row Show all	>Lus10017078 pacid=23167454 polypeptide=Lus10017078 locus=Lus10017078.g ID=Lus10017078.BGIv1.0 annot-version=v1.0 MVSQHFVQSFPSSGGGASISLPPLRRPLPALLVPPTYPLYKVNVDGAVHSGVGGSTCWVLMEATGAVLHAVGTPYPGDKLHHLSQIVSFFPTRDKHGGLH HRRRPELKPQGTRPSSSFEFPSSRRAPAEKWLLGPIEQKKKRWPELGLSLPTSSFRWPDIDLSWRRWSQPSLRWLEFSIDEVLWSLVTAVESIALVTMLC YFFVFCGCTL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49525			unknown protein		Lus10017078 [exp]	0	1
AT2G20690			lumazine-binding family protei...		Lus10039826 [exp]	2.8	0.9542
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10024614 [exp]	4.6	0.9550
AT4G31830			unknown protein		Lus10010682 [exp]	5.7	0.9469
AT3G16990			Haem oxygenase-like, multi-hel...		Lus10037751 [exp]	5.8	0.9651
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10042516 [exp]	12.0	0.9577
AT1G02040	C2H2ZnF		C2H2-type zinc finger family p...		Lus10028173 [exp]	13.4	0.9376
AT2G24370			Protein kinase protein with ad...		Lus10021596 [exp]	15.5	0.9468
AT3G09010			Protein kinase superfamily pro...		Lus10001212 [exp]	15.7	0.9163
					Lus10015413 [exp]	15.7	0.9532
AT3G55520			FKBP-like peptidyl-prolyl cis-...		Lus10040280 [exp]	15.9	0.9383

Compare expression of checked genes

Lus10017078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.