Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06550 859 / 0 RWA2 REDUCED WALL ACETYLATION 2, O-acetyltransferase family protein (.1.2.3) AT2G34410 808 / 0 RWA3 REDUCED WALL ACETYLATION 3, O-acetyltransferase family protein (.1.2.3) AT5G46340 797 / 0 RWA1 REDUCED WALL ACETYLATION 1, O-acetyltransferase family protein (.1) AT1G29890 780 / 0 RWA4 REDUCED WALL ACETYLATION 4, O-acetyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037795 [exp] 1060 / 0 AT5G46340 838 / 0.0 REDUCED WALL ACETYLATION 1, O-acetyltransferase family protein (.1) Lus10003348 [exp] 790 / 0 AT5G46340 905 / 0.0 REDUCED WALL ACETYLATION 1, O-acetyltransferase family protein (.1) Lus10015265 [exp] 746 / 0 AT5G46340 849 / 0.0 REDUCED WALL ACETYLATION 1, O-acetyltransferase family protein (.1) Lus10012523 [exp] 699 / 0 AT5G46340 807 / 0.0 REDUCED WALL ACETYLATION 1, O-acetyltransferase family protein (.1) Lus10000367 [exp] 572 / 0 AT1G29890 605 / 0.0 REDUCED WALL ACETYLATION 4, O-acetyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G102300 [exp] 907 / 0 AT3G06550 843 / 0.0 REDUCED WALL ACETYLATION 2, O-acetyltransferase family protein (.1.2.3) Potri.010G148500 [exp] 902 / 0 AT3G06550 829 / 0.0 REDUCED WALL ACETYLATION 2, O-acetyltransferase family protein (.1.2.3) Potri.001G352300 [exp] 828 / 0 AT2G34410 880 / 0.0 REDUCED WALL ACETYLATION 3, O-acetyltransferase family protein (.1.2.3) Potri.011G079400 [exp] 813 / 0 AT2G34410 861 / 0.0 REDUCED WALL ACETYLATION 3, O-acetyltransferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0316 [flax] [poplar] Acyl_transf_3 PF07779 [flax] [poplar] Cas1_AcylT 10 TM Acyl Transferase domain found in Cas1p
Representative CDS sequence Show only first row Show all	>Lus10017079 pacid=23167444 polypeptide=Lus10017079 locus=Lus10017079.g ID=Lus10017079.BGIv1.0 annot-version=v1.0 ATGGTGATCTCCAGTCCCATCACTCCTGGCCAGGTCGCATTTTTTCTTGGACTTGTACCAGTGTTTGTTGCGTATATTTACTCGGAGTTTCTGGAATACA AGAGGAAGGGCGTAGTCAAGGCGCACTCTGATATCAATTTAGTTGAAGTGGGAAATGAAACCGTTAAAGAAGAAGATAGAGCTGTTCTATTGGAAGGAGG AGGTCTTCAATCTGCATCTCCTAGAGCTCGCACTTTGCATACCCCATCTCCCATATTCAGGTTTTTTCTTATGGATGAGCAATTTCTGACGGAGAACCGT TTGATTCTTCGAGCAATATCTGAGTTTGGTTTTCTTTTGGTGTACTTTTACCTATGCGACCGTACTGATGTCTTTGGATCGTCAAAAAAGACTTACAATC GGGATCTTTTCTTGTTTCTCTACTTTCTTCTCATCATTGTGTCAGCAATCACCTCTTTCAAGATACATCATGATAGGTCACCATTCTCTGGAAAGTCCAT CCTTTATTTGAATAGGCACCAGACTGAGGAGTGGAAAGGATGGATGCAGGTGCTATTTTTGATGTACCATTACTTCGCTGCATCAGAAATATATAATGCA ATCAGAATGTTTATAGCTGCGTATGTCTGGATGACTGGGTTCGGGAACTTCTCATATTATTACGTGCGCAAAGATTTTGGTCTTGTGAGGTTTGCCCAGA TGATGTGGAGGCTCAACTTCTTGGTGATATTCTGCTGCATTATACTGGACAACAGTTACATGCTATATTACATTTGCCCTATGCACACTCTTTTCACTCT AATGGTGTATGGGGCTCTTGGTATTCTGCACAAATACAATGAAATTGGGCTAGTCATTGGTGCGAAAATCATTGCATGCTTCTTGGTGGTTATTCTGATA TGGGAAGTTCCTGGAATCTTTGATATCATCTGGGGCCCATTCACGTTCTTTCTTGGTTATACTGATCCTGCAAAACCTGACTTGCCTCTGTTGCACGAGT GGCATTTCCGCTCTGGCCTTGATCGTTATATATGGATAATTGGAATGATATATGCCTACTATCACCCAACAGTAGAAAGGTGGATGGAGAAATTGGAAGA AATGGAAGTGAAACGAAAATTATCGATTAAAGTGGCTGTGGCTTCAATTGCAATGACGGTTGGGTACCTGTGGTATGAATACATATACAAGCTGGACAAG ATTACTTACAACAAATATCATCCTTATACCTCATGGATACCAATAACTGTATACATTTGTCTGAGGAATGTCACCCAGTACTTCCGGAACTTCAGTTTGA CCCTTTTTGCATGGCTTGGCAAGGTGACTCTGGAGACATACATTTCTCAGTTCCATATCTGGCTAAGATCAAGCATTCCAGATGGTCAGCCAAAATTGCT GTTATCTCTGATCCCTGAGTACCCAATGCTGAACTTTATGCTTACCAGTGCAATATATGTTGCGGTCTCTTACAGACTGTTTGAGCTGACTAATACATTG AAGATTGCTTTCGTGCCCAGCAAAGATAATAAGCGACTGGTATACAACATAGTAACAGCTGCAGTGATTTCCAGTGTTTTGTACACGCTGTCGTTCGTAC TCTTGAGACTTCCGCAGTTGATGGTGTGA
AA sequence Show only first row Show all	>Lus10017079 pacid=23167444 polypeptide=Lus10017079 locus=Lus10017079.g ID=Lus10017079.BGIv1.0 annot-version=v1.0 MVISSPITPGQVAFFLGLVPVFVAYIYSEFLEYKRKGVVKAHSDINLVEVGNETVKEEDRAVLLEGGGLQSASPRARTLHTPSPIFRFFLMDEQFLTENR LILRAISEFGFLLVYFYLCDRTDVFGSSKKTYNRDLFLFLYFLLIIVSAITSFKIHHDRSPFSGKSILYLNRHQTEEWKGWMQVLFLMYHYFAASEIYNA IRMFIAAYVWMTGFGNFSYYYVRKDFGLVRFAQMMWRLNFLVIFCCIILDNSYMLYYICPMHTLFTLMVYGALGILHKYNEIGLVIGAKIIACFLVVILI WEVPGIFDIIWGPFTFFLGYTDPAKPDLPLLHEWHFRSGLDRYIWIIGMIYAYYHPTVERWMEKLEEMEVKRKLSIKVAVASIAMTVGYLWYEYIYKLDK ITYNKYHPYTSWIPITVYICLRNVTQYFRNFSLTLFAWLGKVTLETYISQFHIWLRSSIPDGQPKLLLSLIPEYPMLNFMLTSAIYVAVSYRLFELTNTL KIAFVPSKDNKRLVYNIVTAAVISSVLYTLSFVLLRLPQLMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06550		RWA2	REDUCED WALL ACETYLATION 2, O-...		Lus10017079 [exp]	0	1
AT2G01070			Lung seven transmembrane recep...		Lus10005732 [exp]	2.0	0.9302
AT4G21450			PapD-like superfamily protein ...		Lus10039757 [exp]	2.8	0.8981
AT1G13180		ATARP3, DIS1	DISTORTED TRICHOMES 1, ARABIDO...		Lus10006238 [exp]	3.5	0.8994
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10037795 [exp]	7.1	0.8983
AT5G53340			Galactosyltransferase family p...		Lus10032350 [exp]	8.8	0.8833
AT1G29470			S-adenosyl-L-methionine-depend...		Lus10018954 [exp]	9.0	0.8753
AT4G21450			PapD-like superfamily protein ...		Lus10018534 [exp]	9.6	0.8218
AT2G01070			Lung seven transmembrane recep...		Lus10036166 [exp]	10.7	0.8859
AT5G27490			Integral membrane Yip1 family ...		Lus10015189 [exp]	13.7	0.8480
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10012162 [exp]	13.8	0.8891

Compare expression of checked genes

Lus10017079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.