Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06620 402 / 3e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59540 382 / 4e-132 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G59530 376 / 5e-130 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06650 375 / 2e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G30840 370 / 1e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G04350 367 / 1e-126 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06640 355 / 2e-121 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT5G43450 354 / 2e-121 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30830 353 / 5e-121 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G03410 352 / 1e-119 2A6 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037796 [exp] 673 / 0 AT1G06620 442 / 4e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 493 / 8e-176 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022197 [exp] 448 / 2e-158 AT1G06620 434 / 6e-153 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022195 [exp] 441 / 5e-155 AT1G06620 432 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022191 [exp] 434 / 1e-152 AT1G06620 456 / 3e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027585 [exp] 432 / 9e-152 AT1G06620 429 / 3e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022415 [exp] 426 / 2e-149 AT1G06620 432 / 6e-152 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022196 [exp] 426 / 3e-149 AT5G59530 420 / 5e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022193 [exp] 426 / 3e-149 AT1G06620 455 / 1e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G073232 [exp] 418 / 2e-146 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073166 [exp] 406 / 1e-141 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073300 [exp] 405 / 4e-141 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G165400 [exp] 367 / 2e-126 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073100 [exp] 354 / 5e-121 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.011G156200 [exp] 351 / 5e-120 AT1G06650 430 / 7e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.005G222300 [exp] 326 / 6e-110 AT1G06620 340 / 3e-115 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.013G045000 [exp] 325 / 1e-109 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G040700 [exp] 310 / 8e-104 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G135800 [exp] 302 / 1e-100 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10017080 pacid=23167478 polypeptide=Lus10017080 locus=Lus10017080.g ID=Lus10017080.BGIv1.0 annot-version=v1.0 ATGGACTCTGTCACTGATCGACTCTCCCAGCTGAAAGCCTTCGACGAAACGAAAGCCGGCGTCAAAGGCCTCGCGGACGCCGGAATCAAACAACTCCCCG GATTCTTCCTCGCGCCGCCGCACTTCCTCGACAACGGAACCCACGACGACGATCCAAACGACTTCGTTTTCCCAACCATTGACCTGCTGGGAGGAGGCGG CGGCGATCGGAAGCAGCTTGTCGAGAGAATCAGGGAGGCTTCCGAGAAATGGGGATTCTTCCAAGTGGTGAACCATGGGATTGCAGAGAGTGTACTGGAG GAGATGAAAGCCGGAGTGCGGAGGTTCCACGAACAGGATTTGGACATGAAGAAGGAGTTTTTCGGGAGGGATCCTACCAAGACAGTTGTTTACAACAGCA ATTACGATTTGTATACTACGCCCGTTGTCAACTGGCGGGATTCCGTTCTGTTTCATATGGCTCCGGATGCTCCGAATCCTGAAGAATTGCCCTCTTCCTG CAGGGAAATTGTGATGGAATACAGCAAAGAATTGCTGAAATTATCATATCTACTGTTTCAACTGTTATCAGAAGCTTTGGGTTTACCATCAGATTACTTG AAAGAAATGGACTGTGCAAAAGGGATATACATGGCATGCCATTACCATCCACCTTGCCCTCAGCCAGAGCTTACGCTCGGAGCAACGAAGCATACCGATT TCGACTTCATCACCGTGCTGTTACAGGACCACATCGGAGGTCTTCAGGTTCTCCATCGAGGCCGGTGGGTCGATGTCCCGCCTTTGCAAGGAGGTCTAGT GGTTAACATCGGAGATTTTCTCCAGCTAATGACCAACGACAAGTTCGTAAGTGTGAACCACAGGGTGCTGAGTAAGAGCGCCGGACCCAGAGTGTCGATA GCGTCGTTTTTTAGCACCGGATTTGCTGTGAATGAGAGGCTGTACGGACCTATAAAGGAGTTGGTATCGGCGGATGATCCTCCGAGATACAAGGAAACCA CGATTCAGGATTACACAAACCAGGCTTATAAGAAGGGTCTGGATGGGACCTCTGCACTGCTGAATTTTAAGATCTGA
AA sequence Show only first row Show all	>Lus10017080 pacid=23167478 polypeptide=Lus10017080 locus=Lus10017080.g ID=Lus10017080.BGIv1.0 annot-version=v1.0 MDSVTDRLSQLKAFDETKAGVKGLADAGIKQLPGFFLAPPHFLDNGTHDDDPNDFVFPTIDLLGGGGGDRKQLVERIREASEKWGFFQVVNHGIAESVLE EMKAGVRRFHEQDLDMKKEFFGRDPTKTVVYNSNYDLYTTPVVNWRDSVLFHMAPDAPNPEELPSSCREIVMEYSKELLKLSYLLFQLLSEALGLPSDYL KEMDCAKGIYMACHYHPPCPQPELTLGATKHTDFDFITVLLQDHIGGLQVLHRGRWVDVPPLQGGLVVNIGDFLQLMTNDKFVSVNHRVLSKSAGPRVSI ASFFSTGFAVNERLYGPIKELVSADDPPRYKETTIQDYTNQAYKKGLDGTSALLNFKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10017080 [exp]	0	1
AT5G22450			unknown protein		Lus10000530 [exp]	4.1	1.0000
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10005236 [exp]	4.6	1.0000
					Lus10011642 [exp]	5.5	1.0000
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10003908 [exp]	5.8	1.0000
					Lus10022214 [exp]	6.7	1.0000
AT3G49720			unknown protein		Lus10012481 [exp]	7.5	1.0000
					Lus10027991 [exp]	8.1	1.0000
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10013028 [exp]	8.4	1.0000
					Lus10011078 [exp]	8.5	1.0000
					Lus10035592 [exp]	11.0	1.0000

Compare expression of checked genes

Lus10017080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.