Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47980 404 / 2e-142 unknown protein AT3G62730 316 / 2e-107 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037797 [exp] 590 / 0 AT1G47980 407 / 2e-143 unknown protein Lus10015600 [exp] 65 / 7e-13 AT1G47980 56 / 2e-10 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G102000 [exp] 432 / 2e-153 AT1G47980 415 / 8e-147 unknown protein Potri.001G380000 [exp] 338 / 2e-116 AT3G62730 327 / 4e-112 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017081 pacid=23167397 polypeptide=Lus10017081 locus=Lus10017081.g ID=Lus10017081.BGIv1.0 annot-version=v1.0 ATGTCTGCCTCCCAAATTCTTCCACTTACCCAGCTTGTTGCCGCCGTAGCCACCTTGTTCGTGGTTCTTCCAGTCTCGCATTCGTCTCGCGTTTTTCACC GCGACAGCTACTCTCCGTCGACCACCATTGCCAGCAAGGTGCCTCCATCAGACGTCGATCTGGTCGAGTTCCCCTTGAATCTAGAATACCTCGAGGCCGA ATTCTTCCTCTTTGGCGCTTTGGGGAACGGATTGGACGTTTATGCCCCTAACTTAACCATGGGTGGCCCTCCGCCTATCGGTGCTCACAAGGCTAATCTC GACCATCTCACCCGTGACATCATTGAACAGTTTGCATGGCAAGAGATCGGCCACTTGAGGGCGATAAAGAGTAAGGTGAAGGGATTTCCAAGGCCATTGT TGGATCTGAGCCCAGCATCCTTCGCAAAGGTCATCAACAGTGCATTCGGGAGGCCATTGTTTCCACCCTTTGACCCTTACTGCAATTCAATTAACTATCT CATAGCATCGTACCTTGTTCCTTACGTCGGGCTCACTGGCTACGTTGGTGCTAACCCAAAACTCCAAGGCCCGTCTTCTAGAAAGCTTGTAGCGGGGCTT TTGGCGGTGGAAGCGGGACAAGACGCTGTAATAAGGTCGATGTTGTACGAGAGGTCGTTGATGAAGGTGCATCCGTACGACATCACAGTGGCTGAGTTCA CAAACAAGATCTCCATTCTGAGGAACAAGCTAGGAAACGACGGGATCAAAGACGAAGGTCTGATGGTTCCGAGCGAATTAGGGGCCGAAGGTAAAGTGAG AGGGAATGTGTTGGCCGGAAACGAATTCTCACTGGGCTACGGAAGAACTCCTGAAGAGATCTTGAGGATCGTGTATGGCAACGGCAACGAATCTTCCCCC GGTGGATTTTACCCAAACGGTGCTCGTGGCCTCATCGCCATGTCCCACTTGGGGAAAAACTCCATCTAA
AA sequence Show only first row Show all	>Lus10017081 pacid=23167397 polypeptide=Lus10017081 locus=Lus10017081.g ID=Lus10017081.BGIv1.0 annot-version=v1.0 MSASQILPLTQLVAAVATLFVVLPVSHSSRVFHRDSYSPSTTIASKVPPSDVDLVEFPLNLEYLEAEFFLFGALGNGLDVYAPNLTMGGPPPIGAHKANL DHLTRDIIEQFAWQEIGHLRAIKSKVKGFPRPLLDLSPASFAKVINSAFGRPLFPPFDPYCNSINYLIASYLVPYVGLTGYVGANPKLQGPSSRKLVAGL LAVEAGQDAVIRSMLYERSLMKVHPYDITVAEFTNKISILRNKLGNDGIKDEGLMVPSELGAEGKVRGNVLAGNEFSLGYGRTPEEILRIVYGNGNESSP GGFYPNGARGLIAMSHLGKNSI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47980			unknown protein		Lus10017081 [exp]	0	1
AT3G25900		HMT-1, ATHMT-1	Homocysteine S-methyltransfera...		Lus10034320 [exp]	5.3	0.6358
AT3G53810			Concanavalin A-like lectin pro...		Lus10004982 [exp]	8.1	0.6508
AT5G59530			2-oxoglutarate (2OG) and Fe(II...		Lus10000610 [exp]	9.2	0.5995
AT5G24130			unknown protein		Lus10001061 [exp]	19.8	0.5951
AT4G08850			Leucine-rich repeat receptor-l...		Lus10031161 [exp]	23.2	0.6019
AT3G60290			2-oxoglutarate (2OG) and Fe(II...		Lus10018950 [exp]	23.2	0.6079
					Lus10011769 [exp]	23.9	0.5596
AT4G37840		HKL3	hexokinase-like 3 (.1)		Lus10011584 [exp]	24.3	0.5843
AT3G47570			Leucine-rich repeat protein ki...		Lus10004388 [exp]	25.8	0.6017
AT3G47570			Leucine-rich repeat protein ki...		Lus10030847 [exp]	43.9	0.5636

Compare expression of checked genes

Lus10017081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.