Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16480 508 / 2e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G13650 504 / 1e-162 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 491 / 2e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 491 / 7e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09040 492 / 3e-158 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G09950 482 / 1e-154 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 474 / 4e-153 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 471 / 3e-152 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G18485 445 / 5e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 440 / 7e-141 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037799 [exp] 1259 / 0 AT1G68930 473 / 1e-157 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10013991 [exp] 598 / 0 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 589 / 0 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 498 / 2e-161 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 495 / 4e-159 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014707 [exp] 490 / 2e-158 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033685 [exp] 490 / 5e-157 AT1G16480 962 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10004892 [exp] 481 / 9e-156 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 475 / 2e-153 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G067500 [exp] 1151 / 0 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 585 / 0 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G068600 [exp] 526 / 3e-171 AT1G16480 1183 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G058900 [exp] 514 / 5e-166 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 504 / 1e-164 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 504 / 3e-163 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 498 / 2e-162 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G129100 [exp] 502 / 2e-161 AT5G09950 1287 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G164900 [exp] 493 / 7e-161 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G215500 [exp] 493 / 1e-159 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10017082 pacid=23167452 polypeptide=Lus10017082 locus=Lus10017082.g ID=Lus10017082.BGIv1.0 annot-version=v1.0 ATGGAATCCAAAATCATTACTCAGAGCATGCCTAAATTTATGTCAGCTGTTTCACGTACTCTCCCCTGGAAACAAGCTGCTTCCTTTACCTTTCCTAGAA TCCATACCACAACTCCTTATTTCTCAGCACAGTTTCCTTCTTCTGCTACTTGTACAGCTAATTTACTAGGACCAAAAACAAGCTCTTTCTATGAAAATAA GAAACCACCTGGAGAATCTCCGAGCTCAGAGGTAGCTACGAGATACAGCAAGTTTGATTCTTCAAAAGGGAGGCTAAAGGACTACTCTGCAATGCTTCGA CAATGCACTTCGAAACTGGCCCTAAACAACGGGAGGGCGGTTCATGGGAATATCATAAGGAGTAGGGTTGTGCCTGATTCGCATTTATGGGTTTCTTTAA CTAGTTTCTACTCCAAGTGCGGTTGTCTCCACATAGCACGCCAAGTGCTCGATGAAACGCCTGAACGTGATGTTGTGTCGTGGACGGCTTTAATTTCCGG GTTTGTCAGTAAAGGGTGCGGAGACGATGCTGCTAATCTATATTGCGTGATGAGGAGTGAAGGCGTGAGGCCCAATGAATATCTATTGGCTACTATATTG AAAGCTTGCTCTCTATGCTTGGACGTGGAACTTGGGAAGCAAGTACACGCCGAGGCAGTAAAGGTTGGCTTGTTAAGGGACTTGTTTGTTGCCTCTGGTC TTGTGGATTTTTATGCTAAATGCAAGGAAATTGAACTGGCGGATACGGTGTTCTTTAGCATGTCTGAGAGGAACGCCATTTTATGGAACGTTTTGCTCAA TGCTTATGCTGAAATTGGTGATGGGAAAGCCGTTTTGAAGTTGTTTTCTCAGATAATGGAGTGGGATAACAAGTTAAACAAGTTTACTTTGTCAATTGTT TTAAAGGGGTGTGCGAATTCCGTACATTTGAAAGAAGGTAAGGTTTTGCATTCTATAGTAATCAAAACTGGGTACGAACTTGCTGAATTTGTGACCTCCT GTTTGGTTGATATGTATTCAAAGTGTGGAATGCCAAGTGATGCATTACAAGTCTTTAATGGGATAGAAGATCCTGATGTTGTGGCCTGGAGTGCAATAAT TTCGTGTTTAGATCAGCATATTTCTAACCATGATGCAGCTGAGCTATACAAGAAGATGTTACTTGCAGGAGTCAAACCGAATCAACATATCTTCAGTAGC CTTGTTAGCACTGCTACCAATATGGGGAATCTGCATTTTGGTAAAGGCATTCATGCTTGTATATGCAAGTGGGGTTTGGAGAATGATGTGTTAGTTAGCA ATGCTTTGGTCATGATGTATATGAAACTTGGATTTTTGAAAGATGGTATTCAGGTGTTCAATTCAATGACAGAGCAGAATGTAGAATCATGGAACTACCT TTTATCTGGATTTTGTAACTCTAAGACACCTGAGGTAGGGCCATCAATTTTCCACCAGATACTTCTAGAAGGTTTCAAACCCAGCATGCATACTTTCGTA GACACCTTAAGGTCATGCTCTAGTCTCTCTGATGTGTGCTTTGGCAAGCAAGTGCATGCTCACATCATAAAGAGCTGCAACGATGGTTATGATTTTGTCG GAACAGCTCTTATTGATATGTATGCAAAAGGCAAATGTCTAGAAGATGCAGTAGCAGCTTTCAACAGATTGGTTGATCGGGATGTTTACACTTGGACGGT CTTAATTGATGGTTATTCAAAAACAAATCAACCAGAAAAGGCTTTGAAATGTTTGGTAGAGATGCAAAGAGAAGGTGTGGACCCAAATGAGTTCACTCTT GCTAGCTGTTTAAATGGGTGTTCCCATTTGACAACCCTGGAAGATGGGCAGCAGGTGCATTCTATGGTTATGAAAGCTGGTCATACGGGCGACATTATTG TGGCTACTGCACTTATTGATATGTATGGCAAGTGTGGCTGCATGGAAGATGCCAAGTCAATTTTTAAGGGTATGGTCATGCGAGATTCAGTCTCGTGGAA TGCAATAATTGCAGTTTATTCATGGCATTGTCAAGGAGAAAATGCTCTTGACACCTATAGAATGATGATCGAGGAAGGATTTCTACCTGATGATGTGACT TTCTCGAGCATTCTCTCTGTATGCAGCAACATGGGTCTAGTTGAAGAGGGGGAAAAGCAATTTGAGTCCATGAGCAAAGTTTATGGAATTACTCCTTCAC TCGAGCATTTTGCTTGCATGGTCAATATTCTTGCTCGGGCTGGCCAGTTTAAGGAGGTTGAAGTCTTCATTAAGGAACATAAGTTGATTACACATGCCTT GATATGGGAGACTGTACTTGGAGCTTGTAAAACTCATGCAAATGTTAAGCTTGGTGAAACTGCAGCTAAGAAACTCTTTGAACTTCAACCAAAGGTGGAC TCTGCTTATATATCCCTGTCAAATATTTATGCTGCTAAAGGTATGTGGGTTGATGTCCAGAAAATAAGGAGATTGATGTCTGCTGAGGGTGTTAAGAAGG GAACTGGCTGTAGCTGGGTGGGAATTGATGGTAAAGTACATGTCTTTGTTTCTCAAGATGGTTCTCATCCCAAGACAGACCAAATCTATGCTAAGTTGGA GAATTTGAAACAAAGGCTATCTTCAGTTGGTTATATCCCAAAAATAGAGAATGTGCTTCATAATCTCGGCAATAGTGAGAAAATGGAACATCTCTGGCAT CACAGTGAGAGACTAGCTCTGTCTCTGGCCCTGATAAGCACAGCTCCTGAGAAGCCAATACGTATTTTCAAGAATCTACGGATATGTGAGGACTGCCATG ATGGTATGCAGAGTATCCTTATCAATGATACGCAAGGTATCTGA
AA sequence Show only first row Show all	>Lus10017082 pacid=23167452 polypeptide=Lus10017082 locus=Lus10017082.g ID=Lus10017082.BGIv1.0 annot-version=v1.0 MESKIITQSMPKFMSAVSRTLPWKQAASFTFPRIHTTTPYFSAQFPSSATCTANLLGPKTSSFYENKKPPGESPSSEVATRYSKFDSSKGRLKDYSAMLR QCTSKLALNNGRAVHGNIIRSRVVPDSHLWVSLTSFYSKCGCLHIARQVLDETPERDVVSWTALISGFVSKGCGDDAANLYCVMRSEGVRPNEYLLATIL KACSLCLDVELGKQVHAEAVKVGLLRDLFVASGLVDFYAKCKEIELADTVFFSMSERNAILWNVLLNAYAEIGDGKAVLKLFSQIMEWDNKLNKFTLSIV LKGCANSVHLKEGKVLHSIVIKTGYELAEFVTSCLVDMYSKCGMPSDALQVFNGIEDPDVVAWSAIISCLDQHISNHDAAELYKKMLLAGVKPNQHIFSS LVSTATNMGNLHFGKGIHACICKWGLENDVLVSNALVMMYMKLGFLKDGIQVFNSMTEQNVESWNYLLSGFCNSKTPEVGPSIFHQILLEGFKPSMHTFV DTLRSCSSLSDVCFGKQVHAHIIKSCNDGYDFVGTALIDMYAKGKCLEDAVAAFNRLVDRDVYTWTVLIDGYSKTNQPEKALKCLVEMQREGVDPNEFTL ASCLNGCSHLTTLEDGQQVHSMVMKAGHTGDIIVATALIDMYGKCGCMEDAKSIFKGMVMRDSVSWNAIIAVYSWHCQGENALDTYRMMIEEGFLPDDVT FSSILSVCSNMGLVEEGEKQFESMSKVYGITPSLEHFACMVNILARAGQFKEVEVFIKEHKLITHALIWETVLGACKTHANVKLGETAAKKLFELQPKVD SAYISLSNIYAAKGMWVDVQKIRRLMSAEGVKKGTGCSWVGIDGKVHVFVSQDGSHPKTDQIYAKLENLKQRLSSVGYIPKIENVLHNLGNSEKMEHLWH HSERLALSLALISTAPEKPIRIFKNLRICEDCHDGMQSILINDTQGI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10017082 [exp]	0	1
AT4G30150			unknown protein		Lus10007572 [exp]	3.6	0.9250
AT2G02150		EMB2794	EMBRYO DEFECTIVE 2794, Tetratr...		Lus10034421 [exp]	5.3	0.8834
AT4G04940			transducin family protein / WD...		Lus10035842 [exp]	7.2	0.9220
AT1G10490			Domain of unknown function (DU...		Lus10005792 [exp]	8.5	0.9102
AT3G19740			P-loop containing nucleoside t...		Lus10040976 [exp]	9.8	0.8937
AT5G58450			Tetratricopeptide repeat (TPR)...		Lus10042248 [exp]	10.0	0.8991
AT4G17610			tRNA/rRNA methyltransferase (S...		Lus10001005 [exp]	10.2	0.8821
AT3G13770			Pentatricopeptide repeat (PPR)...		Lus10037798 [exp]	11.5	0.8443
AT1G68990		MGP3	male gametophyte defective 3 (...		Lus10019207 [exp]	12.8	0.8966
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10006875 [exp]	14.0	0.8600

Compare expression of checked genes

Lus10017082 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.