Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037800 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017083 pacid=23167447 polypeptide=Lus10017083 locus=Lus10017083.g ID=Lus10017083.BGIv1.0 annot-version=v1.0 ATGCTCGCTATCGCTGTCTTACCCGAGTTTTTGACTTCGATAACGAACAGCCTTGGCACTACTGTGGATGTTCTCTCTGCTACCGAGGTGCTGCGCCTAA CCAGGAATGGTGTTGGTATGATGCATACTTTTCCCATGAAGAGGATCCTACTAAGCGCTGGTGAGCTATGCATACTCACTCTCATTTCCATTACTGGTTT GGTGTTGGTCGACACCAGCTCACCAACCCCAGCTGGTCTTGTGGTGAATTGTCTGTTGCTGCGTAGTCCAGCGGCCAAACAACTCCTCAAAGCAAGCAGT CCCCCACCCGAAAATGTAGACGCACGGTTTGTTGATGCGCAGCAGTTTCAAGAATCTGCAAGTGGCCGTGTCAAACTGTAA
AA sequence Show only first row Show all	>Lus10017083 pacid=23167447 polypeptide=Lus10017083 locus=Lus10017083.g ID=Lus10017083.BGIv1.0 annot-version=v1.0 MLAIAVLPEFLTSITNSLGTTVDVLSATEVLRLTRNGVGMMHTFPMKRILLSAGELCILTLISITGLVLVDTSSPTPAGLVVNCLLLRSPAAKQLLKASS PPPENVDARFVDAQQFQESASGRVKL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10017083 [exp]	0	1
AT1G80100		AHP6	histidine phosphotransfer prot...		Lus10011487 [exp]	8.7	0.6848
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10012271 [exp]	16.7	0.5887
					Lus10005172 [exp]	27.3	0.4948
AT3G01410			Polynucleotidyl transferase, r...		Lus10032166 [exp]	38.2	0.5831
AT3G07060		EMB1974	embryo defective 1974, NHL dom...		Lus10022801 [exp]	43.2	0.5572
					Lus10000761 [exp]	81.8	0.5079
					Lus10018446 [exp]	114.2	0.5157
AT5G03300		ADK2	adenosine kinase 2 (.1)		Lus10023197 [exp]	128.0	0.4705

Compare expression of checked genes

Lus10017083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.