Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17170 266 / 7e-88 RFC3 REGULATOR OF FATTY-ACID COMPOSITION 3, Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037801 [exp] 329 / 3e-105 AT5G49580 595 / 0.0 Chaperone DnaJ-domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G101900 [exp] 283 / 2e-94 AT3G17170 265 / 2e-87 REGULATOR OF FATTY-ACID COMPOSITION 3, Translation elongation factor EF1B/ribosomal protein S6 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01250 [flax] [poplar] Ribosomal_S6 Ribosomal protein S6
Representative CDS sequence Show only first row Show all	>Lus10017084 pacid=23167466 polypeptide=Lus10017084 locus=Lus10017084.g ID=Lus10017084.BGIv1.0 annot-version=v1.0 ATGGAAGCGCTATGTCACTTCTCCTCAGCGGCTTATCCGAATCCAAACCTTCCCAAACGGAAAGTGGCCGGCGGCGGCGGCAGCAGCAGCAACTCTGGCA TCTTCAATTTCCCTCTACATTTCTCTTCTTCTTGTTTTTCTCCGTACTCACCCAATTCGAGGAGGTCGGCTCTGACTGTCCGTGCCAAAAAGAAAAAAGA CAAGAAAGAGGACGACCACTACTTTGTCCCCAAACCGGATGAAGCCACCGGACCTTTCCCTGAGTCCGTTCTTCTCCGAAAGAAGAAGGTGCAGGAAGAT GGTAGGGTCCTCCCCGAATTCGCTGACGTTGAAGAAGAAAAGCTGTACGATTTTCTGAACCTGGAGCTTCAAAGTGGTTTGGATGTGGACCGGATGCGGC ATTACGAAGTGGTTTATCTAATCCACGAGATGTATGCGGAGGAAGTTGACAAAGTGAACGACAAGGTTCAAGATTTTTTGAGGGAGAAAAAAGGCAAGGT ATGGAGGATGAACGACTGGGGAATGAGAAGGCTAGCGTACAGGATCCAGAAAGCGTGGAATGCTCACTACATTCTGATGAATTTTGAGATGGAAGCCAAG TGGATCAACGAGTTCAAGACTCTGTTGGACAAGGACGAGAGGGTCATCCGACACCTTGTCATCAAACGAGATAAAGCCATCACTCAGGATGATCCTCCTC CGCTTGAGTTCCATACTCTCAAACAGGATGCTTCAGATGAAGATGATGACGACGAGGAGGATGAGGAGGGTGAGTATGATGATGATGACGATGATGAAGA AGATTGGGAGGAGGATGAGGAGGAGGATGGTGAAGAGTCGGAAGATGGTGTTGTGATTGTGAACATTGATGACGATGATGATGATGATGAGGAACGAAGT GGTAATGGGGGGAAGACGAAGAGTGTGAATTCGACTGCTGACTCGAACGGAAGAAATAAGGTGGCTGATAAAGTAAGAAGGTAG
AA sequence Show only first row Show all	>Lus10017084 pacid=23167466 polypeptide=Lus10017084 locus=Lus10017084.g ID=Lus10017084.BGIv1.0 annot-version=v1.0 MEALCHFSSAAYPNPNLPKRKVAGGGGSSSNSGIFNFPLHFSSSCFSPYSPNSRRSALTVRAKKKKDKKEDDHYFVPKPDEATGPFPESVLLRKKKVQED GRVLPEFADVEEEKLYDFLNLELQSGLDVDRMRHYEVVYLIHEMYAEEVDKVNDKVQDFLREKKGKVWRMNDWGMRRLAYRIQKAWNAHYILMNFEMEAK WINEFKTLLDKDERVIRHLVIKRDKAITQDDPPPLEFHTLKQDASDEDDDDEEDEEGEYDDDDDDEEDWEEDEEEDGEESEDGVVIVNIDDDDDDDEERS GNGGKTKSVNSTADSNGRNKVADKVRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17170		RFC3	REGULATOR OF FATTY-ACID COMPOS...		Lus10017084 [exp]	0	1
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Lus10035045 [exp]	1.4	0.9352
AT3G12930			Lojap-related protein (.1)		Lus10027381 [exp]	1.7	0.9154
AT1G77122			Uncharacterised protein family...		Lus10018923 [exp]	5.7	0.8657
AT5G40160		EMB139, EMB506	embryo defective 506, EMBRYO D...		Lus10032165 [exp]	7.7	0.9063
AT3G12930			Lojap-related protein (.1)		Lus10002544 [exp]	8.2	0.9115
AT1G12410		EMB3146, CLP2, ...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10004319 [exp]	8.9	0.9163
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Lus10036570 [exp]	8.9	0.8972
AT3G48500		PDE312, PTAC10	PLASTID TRANSCRIPTIONALLY ACTI...		Lus10005030 [exp]	12.0	0.9034
AT1G67440		EMB1688	embryo defective 1688, Minichr...		Lus10015794 [exp]	16.0	0.8382
AT3G04650			FAD/NAD(P)-binding oxidoreduct...		Lus10042542 [exp]	16.0	0.8996

Compare expression of checked genes

Lus10017084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.