Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49580 578 / 0 Chaperone DnaJ-domain superfamily protein (.1) AT1G16680 296 / 1e-91 Chaperone DnaJ-domain superfamily protein (.1) AT1G79030 283 / 1e-86 Chaperone DnaJ-domain superfamily protein (.1) AT2G20560 61 / 1e-09 DNAJ heat shock family protein (.1) AT4G28480 60 / 2e-09 DNAJ heat shock family protein (.1.2) AT5G01390 57 / 1e-08 DNAJ heat shock family protein (.1.2.3.4) AT5G16650 54 / 1e-08 Chaperone DnaJ-domain superfamily protein (.1) AT3G17830 58 / 2e-08 Molecular chaperone Hsp40/DnaJ family protein (.1) AT3G08910 57 / 2e-08 DNAJ heat shock family protein (.1) AT1G10350 57 / 2e-08 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037801 [exp] 1085 / 0 AT5G49580 595 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Lus10032666 [exp] 320 / 3e-100 AT1G79030 772 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Lus10043089 [exp] 193 / 4e-55 AT1G79030 398 / 6e-136 Chaperone DnaJ-domain superfamily protein (.1) Lus10017980 [exp] 61 / 1e-09 AT4G39150 532 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10041972 [exp] 61 / 2e-09 AT4G39150 534 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10022297 [exp] 60 / 3e-09 AT3G62600 522 / 0.0 DNAJ heat shock family protein (.1) Lus10017687 [exp] 59 / 4e-09 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10014584 [exp] 59 / 9e-09 AT3G62600 521 / 0.0 DNAJ heat shock family protein (.1) Lus10021961 [exp] 58 / 1e-08 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G148900 [exp] 764 / 0 AT5G49580 613 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Potri.008G101800 [exp] 390 / 1e-129 AT5G49580 355 / 1e-116 Chaperone DnaJ-domain superfamily protein (.1) Potri.001G438300 [exp] 324 / 4e-102 AT1G79030 783 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Potri.011G142000 [exp] 307 / 2e-95 AT1G79030 749 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Potri.018G034600 [exp] 60 / 3e-09 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.011G057601 [exp] 57 / 1e-08 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 57 / 2e-08 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 57 / 2e-08 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 57 / 2e-08 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 56 / 3e-08 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10017085 pacid=23167440 polypeptide=Lus10017085 locus=Lus10017085.g ID=Lus10017085.BGIv1.0 annot-version=v1.0 ATGGCTCGCAAAGGGAGCCAACAGAAGAATGGAATACCTAATCATAAGAAAAAGACTCCAGACTCAGAGGTGAAAGGGCAAGGTAAAGCTAGTCAAGCGA AGGTTTTTCCTGGAGAGGGTCTCCTGAATGGTGATCAGCCAGCTATTCCTAGTACGGATGCTGTGAAAATAACACATGTTGGAGATGAGAACAGGAAGCA ACAGAAGTCTGGCAAGTCTCAGAAGAAAGAGAAGCAAGGAGCACATGAAGGTCATGAAGTAGAGGAATCAGTTACCCGTGGTGTTAGTTTGAGCAATCCC ATCAATCCTTCTGCAGAAAGTATTAGGTTGAGAGAAGAACATGAGGAAACTGGCACAGCAAATGGTCCAACAAACTGGACAGATATGCCTGGAGATTTGA TCAATCGCTTTCACCTTAGAAATTTAATGGATAATGTTGACTTTTCTGGAAACATGGCAGCCAGAAACCTGAGAGCATCATCTTCATCTTTGTTGAAGGC AGCAGGCAAGTGGATTGAAAAGCAGAGGCCATTGTTTATTGCCCTTACCGCCAACCTAGCTGATGCCCGTGATTATGCTAGACAGAAGTTTGACATAGCT TATCCTGTTGTATTGAAATGGCTTTCGCATCTTGGGAATATAGTAATCCTTTTATCAGTGGTTTGGTTAGACTGCACTGCAAGAGGGATTGATTCCTTTC TACGGATGGGGACAACATCATTTTTCTCTGTTATATGGTGTAGCGTTCTGTCGATGATTGCTATGGTCGGGGTATCCAAGTTTCTAATTGTTCTGGGGAT AGCTGCAGCTGTGGGACTTTTCATAGGGTTTACCCTTGGGCTATTGATTGTTGCCATTTCTGCTACTGTTTTCCTATGGTGTTATGGAAGCTTTTGGACT ACAGTGTGCATTACTGTAATTTCTGGTTTAACATTCTTATCAAGCCATGAAAGTCTTGCTTTACTAATCACCACTACTTACTCAGTATACTGTGCATGGG GATATGTCGGATGGCTTGGTTTACTTTTGGCGTTGAATTTGGCTTTTATCTCGAGTGACATTTTGGTTTACTTCTTAAAGAATAACATTCACCGTCATAG AAGGTCTGATGGACCTTTTGAGAATTCAGCTGGACCCCAAGATATTCCTAACTTCTCTAATAGTGAATCTTTCCAACCTGGATTCACCGAGTCTGTGCCT GGTGCATCCGAAGACCGCAGCCCTGGTGTGGCTTCAACCAGTGGGACAGATTCAGAGTTAGGTTCTGAAGATGAGGTTATCCGTTTGCTGAACTGTACTG ATCACTACTCCGTGTTGAGATTGTCTCGCTATGAAAATGTGGACATTGCTTTACTGAAGAAAGAATATAGGAAAAAGGCAATGCTGGTTCATCCGGATAA GAATATGGGAAATGATAAGGCAGCAGAAGCCTTTAAAAAACTTCAAAACGCGTATGAGGTACTACTTGATTCCTCAAAACAAAAGGCCTATGATGATGAA TTGCGGAGGGAAGAATTGATAAATTATTTCCGAAGGTTTCATAGTAATTCTCAAAAGAATGGAGAGCATGGCCCCTTCCCGCCTGGCTTTTCATTTTCAG AAGCCAACGGCGATGATCCTTTTGGAGATTCAAGACGAATTGCCTGCAAAAGGTGTGGCAACTTTCATATCTGGGTGTATACAGCAAAACCAAAAGCTCG AGCAAGATGGTGTCAGGAATGCAAAGATTTTCATCCAGCAAAAGATGGAGATGGGTGGGTTGAGCAATCTGCACAACCTTTGTTATTCGGATTACTCCAG AAGGTGGAAGCCCCTTTTGCATATGTTTGCGCAGACAGCAAGATATACAATGCTACTGAGTGGTATAATTGTCAGGGAATGAGATGTCCACCAAACACCC ACAAACCTAGTTTCCATGTGAATACTAACCTAACATCCAAACATACCAGCACCACCAAGGGCTCCACAAGTTCAGGACAAAAGAACAGCCGGATGCCGCC GCCGCCAGCTAACATGGAAGAAACAATTACTGAGGAGGAGTTCTTCGAATGGTTTCAGAACGCGATGCAATCAGGAGCGTTTGACAACGTTGGTGGCAGA GGAGCATCAGCTGCCGAGACCCCTTCGTCTTCCAAGGCAGCCGGAAATGGTGTGAAGAGCGGGGGCAGTGGTAATAGTAGTAAGAAGAAGAAAAGGGGGA AGAAGTGGTAA
AA sequence Show only first row Show all	>Lus10017085 pacid=23167440 polypeptide=Lus10017085 locus=Lus10017085.g ID=Lus10017085.BGIv1.0 annot-version=v1.0 MARKGSQQKNGIPNHKKKTPDSEVKGQGKASQAKVFPGEGLLNGDQPAIPSTDAVKITHVGDENRKQQKSGKSQKKEKQGAHEGHEVEESVTRGVSLSNP INPSAESIRLREEHEETGTANGPTNWTDMPGDLINRFHLRNLMDNVDFSGNMAARNLRASSSSLLKAAGKWIEKQRPLFIALTANLADARDYARQKFDIA YPVVLKWLSHLGNIVILLSVVWLDCTARGIDSFLRMGTTSFFSVIWCSVLSMIAMVGVSKFLIVLGIAAAVGLFIGFTLGLLIVAISATVFLWCYGSFWT TVCITVISGLTFLSSHESLALLITTTYSVYCAWGYVGWLGLLLALNLAFISSDILVYFLKNNIHRHRRSDGPFENSAGPQDIPNFSNSESFQPGFTESVP GASEDRSPGVASTSGTDSELGSEDEVIRLLNCTDHYSVLRLSRYENVDIALLKKEYRKKAMLVHPDKNMGNDKAAEAFKKLQNAYEVLLDSSKQKAYDDE LRREELINYFRRFHSNSQKNGEHGPFPPGFSFSEANGDDPFGDSRRIACKRCGNFHIWVYTAKPKARARWCQECKDFHPAKDGDGWVEQSAQPLLFGLLQ KVEAPFAYVCADSKIYNATEWYNCQGMRCPPNTHKPSFHVNTNLTSKHTSTTKGSTSSGQKNSRMPPPPANMEETITEEEFFEWFQNAMQSGAFDNVGGR GASAAETPSSSKAAGNGVKSGGSGNSSKKKKRGKKW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49580			Chaperone DnaJ-domain superfam...		Lus10017085 [exp]	0	1
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10038880 [exp]	2.0	0.8824
AT4G01000			Ubiquitin-like superfamily pro...		Lus10010125 [exp]	3.2	0.8653
AT3G09320			DHHC-type zinc finger family p...		Lus10010852 [exp]	5.3	0.8296
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Lus10032516 [exp]	7.1	0.8677
AT3G17470		ATCRSH	Ca2+-activated RelA/spot homol...		Lus10028191 [exp]	7.7	0.8386
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10043330 [exp]	8.0	0.8404
AT3G17900			unknown protein		Lus10037215 [exp]	9.1	0.8726
AT2G27090			Protein of unknown function (D...		Lus10026763 [exp]	9.2	0.8341
AT3G49350			Ypt/Rab-GAP domain of gyp1p su...		Lus10008839 [exp]	10.4	0.8305
AT2G42160		BRIZ1	BRAP2 RING ZnF UBP domain-cont...		Lus10038095 [exp]	11.3	0.8206

Compare expression of checked genes

Lus10017085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.