Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49610 500 / 6e-179 F-box family protein (.1) AT2G02030 86 / 2e-18 F-box family protein (.1) AT1G12870 79 / 4e-16 F-box and associated interaction domains-containing protein (.1) AT1G33530 79 / 4e-16 F-box family protein (.1) AT1G12855 76 / 5e-15 F-box family protein (.1) AT5G07610 71 / 2e-13 F-box family protein (.1) AT2G43445 71 / 3e-13 F-box and associated interaction domains-containing protein (.1) AT1G71320 71 / 3e-13 F-box family protein (.1) AT2G43260 70 / 6e-13 F-box and associated interaction domains-containing protein (.1) AT5G10340 67 / 3e-12 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037802 [exp] 708 / 0 AT5G49610 497 / 1e-177 F-box family protein (.1) Lus10010910 [exp] 78 / 9e-16 AT3G23880 101 / 1e-23 F-box and associated interaction domains-containing protein (.1) Lus10018106 [exp] 77 / 2e-15 AT3G06240 95 / 3e-21 F-box family protein (.1) Lus10031512 [exp] 71 / 3e-13 AT3G16210 100 / 8e-23 F-box family protein (.1) Lus10024021 [exp] 69 / 1e-12 AT5G07610 79 / 9e-16 F-box family protein (.1) Lus10013872 [exp] 68 / 2e-12 AT3G06240 101 / 2e-23 F-box family protein (.1) Lus10041733 [exp] 67 / 7e-12 AT5G07610 79 / 1e-15 F-box family protein (.1) Lus10038603 [exp] 67 / 7e-12 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10015048 [exp] 66 / 2e-11 AT5G07610 74 / 3e-14 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G149000 [exp] 577 / 0 AT5G49610 528 / 0.0 F-box family protein (.1) Potri.010G224400 [exp] 112 / 9e-28 AT1G64295 161 / 1e-45 F-box associated ubiquitination effector family protein (.1) Potri.008G038000 [exp] 110 / 4e-27 AT1G64290 175 / 3e-51 F-box protein-related (.1) Potri.008G214000 [exp] 100 / 1e-23 AT1G64295 140 / 3e-38 F-box associated ubiquitination effector family protein (.1) Potri.017G066400 [exp] 98 / 8e-23 AT1G64295 125 / 9e-33 F-box associated ubiquitination effector family protein (.1) Potri.014G187100 [exp] 89 / 1e-19 AT1G64295 132 / 2e-35 F-box associated ubiquitination effector family protein (.1) Potri.001G462650 [exp] 88 / 3e-19 AT1G64295 121 / 3e-31 F-box associated ubiquitination effector family protein (.1) Potri.006G013000 [exp] 87 / 7e-19 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G254000 [exp] 87 / 9e-19 AT5G07610 149 / 1e-40 F-box family protein (.1) Potri.007G037500 [exp] 85 / 4e-18 AT1G64295 130 / 9e-35 F-box associated ubiquitination effector family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10017086 pacid=23167420 polypeptide=Lus10017086 locus=Lus10017086.g ID=Lus10017086.BGIv1.0 annot-version=v1.0 ATGGCGGAGGAATTCTTCCCAGACGAAGTCATCCTCCAAATCCTATGTCGACTCCCCGTGAAATCATTGTTCCAAGCCAGAGCGGTTTCCAGAAGGTGGT ACTCGCTATCCACAGATAAGTATTTCGTCCGACTGTACAACAGAGTAGCCGTCGCGACTTCCAAAGTTCTGGTAGATGTCACGGATCCATCCGAATTGAA ATCCATGTCCAATCTAATCTGCGTCGATAATCTAGCCGGCGTATCAGAGCTCTCCCTCGATTTCCTGGGCGATCGCGTCAAAATCAGAGCCTCCTGTAAC GGCTTGCTGTGTTGCTCTTGCGTTCCCGATAAAGGTTTGTATTACGTCTGCAACCCTGTGACTAGGCAGTTTAGGATGCTTCCCAGAACTAGAGAAAGGC CTGTTACTAGGTTTTACCCCGATAGCGATCCGACATTGGTCGGTTTGGGATGTGATTTATCGTCGCAGAAGTTTAATGTCGTACTGGCATTCTTTCACCG GACATTCGGCCATAGGCCGGATGGGACGTTTGTGTGCTTCGTGTTCGATTCTGAGACGAATCAATGGAGGAAGTTTGTGTCGATCCAGGACGATCATTTC ACTCACATGAATAGGAATCAGGTCGTGTTTGTGAACGGTTCGCTGCATTGGTTGACCGGCAGCTGCTCGTTCGTCCTTGCGCTCGATGTCGAATGTGACG CGTGGAGGAAGATTTCTTTACCCGAAGAGGTGAGTTATGGGGTTGGGAACAGGGTTTATCTGCTCGAATTGGGCGGTTGTTTGTCGGTGGTCCAGATTTC GGAGGCGTGGATGAAAATATGGGCGATGAAGGATTACGAGAGCGAAGTGTGGAGTGTTGTGGATAGAGTGAGCTTGAGGTGTATTAGAGGGATGGTTCCT GGGATCTTTCCGATTAGCCAGACGAGCGAGTTTGTGTTCATGGCGAGTCATAAGCAGGTGCTGGTTTACAATAGGAGGAGCAGGGTGTGGAAAGAGATGT ATTCTTTGCAAACCAATAGCTCCCCTTTCCCGTTGTGGTTCTCGGCCCATGCTTTTCGAAGCACGATCTTCCCTTGCAACTGA
AA sequence Show only first row Show all	>Lus10017086 pacid=23167420 polypeptide=Lus10017086 locus=Lus10017086.g ID=Lus10017086.BGIv1.0 annot-version=v1.0 MAEEFFPDEVILQILCRLPVKSLFQARAVSRRWYSLSTDKYFVRLYNRVAVATSKVLVDVTDPSELKSMSNLICVDNLAGVSELSLDFLGDRVKIRASCN GLLCCSCVPDKGLYYVCNPVTRQFRMLPRTRERPVTRFYPDSDPTLVGLGCDLSSQKFNVVLAFFHRTFGHRPDGTFVCFVFDSETNQWRKFVSIQDDHF THMNRNQVVFVNGSLHWLTGSCSFVLALDVECDAWRKISLPEEVSYGVGNRVYLLELGGCLSVVQISEAWMKIWAMKDYESEVWSVVDRVSLRCIRGMVP GIFPISQTSEFVFMASHKQVLVYNRRSRVWKEMYSLQTNSSPFPLWFSAHAFRSTIFPCN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49610			F-box family protein (.1)		Lus10017086 [exp]	0	1
AT1G70000	MYB		myb-like transcription factor ...		Lus10010733 [exp]	2.0	0.8846
AT5G43150			unknown protein		Lus10041628 [exp]	2.2	0.8533
AT5G49610			F-box family protein (.1)		Lus10037802 [exp]	2.4	0.8594
AT3G06780			glycine-rich protein (.1)		Lus10037706 [exp]	4.9	0.8794
					Lus10024091 [exp]	6.0	0.8326
AT2G31820			Ankyrin repeat family protein ...		Lus10027074 [exp]	8.0	0.8394
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10018178 [exp]	9.0	0.8390
AT1G07310			Calcium-dependent lipid-bindin...		Lus10005867 [exp]	11.8	0.8443
AT1G64140			unknown protein		Lus10032329 [exp]	14.8	0.8141
AT3G27250			unknown protein		Lus10032077 [exp]	15.9	0.8344

Compare expression of checked genes

Lus10017086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.