Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49600 145 / 3e-43 Protein of unknown function, DUF538 (.1) AT1G09310 105 / 1e-27 Protein of unknown function, DUF538 (.1) AT5G46230 104 / 1e-27 Protein of unknown function, DUF538 (.1) AT1G56580 104 / 2e-27 SVB SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) AT4G24130 88 / 2e-21 Protein of unknown function, DUF538 (.1) AT1G30020 81 / 1e-18 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037804 [exp] 362 / 2e-128 AT5G49600 144 / 2e-44 Protein of unknown function, DUF538 (.1) Lus10018630 [exp] 115 / 2e-31 AT1G09310 195 / 5e-64 Protein of unknown function, DUF538 (.1) Lus10039866 [exp] 113 / 2e-30 AT1G09310 196 / 5e-64 Protein of unknown function, DUF538 (.1) Lus10017330 [exp] 107 / 2e-28 AT4G24130 209 / 3e-70 Protein of unknown function, DUF538 (.1) Lus10031428 [exp] 106 / 3e-28 AT1G09310 185 / 2e-60 Protein of unknown function, DUF538 (.1) Lus10010904 [exp] 106 / 4e-28 AT1G09310 185 / 1e-60 Protein of unknown function, DUF538 (.1) Lus10001674 [exp] 99 / 3e-25 AT4G24130 212 / 2e-71 Protein of unknown function, DUF538 (.1) Lus10017655 [exp] 86 / 2e-20 AT1G56580 115 / 1e-33 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Lus10000355 [exp] 78 / 1e-17 AT5G46230 117 / 1e-34 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G149100 [exp] 140 / 5e-41 AT5G49600 152 / 3e-47 Protein of unknown function, DUF538 (.1) Potri.005G011200 [exp] 114 / 7e-31 AT1G56580 192 / 4e-63 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.013G007000 [exp] 110 / 8e-30 AT1G56580 176 / 5e-57 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.004G064700 [exp] 103 / 3e-27 AT5G46230 184 / 4e-61 Protein of unknown function, DUF538 (.1) Potri.003G146400 [exp] 103 / 6e-27 AT4G24130 211 / 5e-71 Protein of unknown function, DUF538 (.1) Potri.001G084200 [exp] 102 / 1e-26 AT4G24130 208 / 5e-70 Protein of unknown function, DUF538 (.1) Potri.004G084600 [exp] 70 / 1e-14 AT1G56580 96 / 9e-26 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.004G056700 [exp] 66 / 4e-13 AT1G09310 99 / 4e-27 Protein of unknown function, DUF538 (.1) Potri.017G133300 [exp] 62 / 4e-12 AT1G56580 69 / 1e-15 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10017087 pacid=23167410 polypeptide=Lus10017087 locus=Lus10017087.g ID=Lus10017087.BGIv1.0 annot-version=v1.0 ATGTTCGACGTATCCTCAACCATCGCTCAGACAAGCTTCGCCATCCAAGAGATGAAGACCACCAACTCCGCCGAGGTCCACCACGGCGACGACAACTGCA GAGCCAAGTTCAGGCAGCTCCTCTCCGGCATCGGCCTCCCCACCGAGCTCCTCGTCGTCGAGGACATCCAGGAATGCGGCTACGTCGAGAAAACAGGGTT CGTCTGGCTCAAGCTTAACAAGACCAAGAAGAACCACTACAAGTTCGACAACGTCAGCCTCTGCTACGACGACGTCATCACTGCCTCCTTGGAGAGGAAC AGGATCAAGAATCTGACCGGGGTCAAGGCCAAGGAGTTCCTGGTCTGGATCGCGTTGAGTGAAATCCACGTAACCGATGCCGCCGGCAAGAGAAACTCCA TCGTCGGCTTCGGTGGGAGGAGGAGTTCTTCTTCAACTATCACGTTCAAGACTCCGGTGGGGCTTTCAAAGTCGTTTCCTTTGTCGTTGTTTGTCGGTGG TGATGAAGTTGCAACGAAATCGGGAATCCAACTGGCGTCAAGAACAGACTTACTAATGCTTTGTGTGAAGGGATTGAAGGAAGAATATGCTTACATATAC TCACTTGCAGACAAGGAATATGCTGGGAATTGGGGCTTCAGCTTCTGTAAATCTTGGGGTTGCACTCCCCGAATCCAAACCTCTCAAGATGAAAATCGGC AGAACTACCGCATCCGCTACACCTCGTTCGCTCCCGAGAAGAAAACAATATGTGTTGTCGCCGTGACTCTCACCGCCGATCAAGACGCCGCCGCCGCCAG TGGATTGTGGTTCAAGAACAGCAATAAGCAAGTGAACAAGCAGTCAACTTGA
AA sequence Show only first row Show all	>Lus10017087 pacid=23167410 polypeptide=Lus10017087 locus=Lus10017087.g ID=Lus10017087.BGIv1.0 annot-version=v1.0 MFDVSSTIAQTSFAIQEMKTTNSAEVHHGDDNCRAKFRQLLSGIGLPTELLVVEDIQECGYVEKTGFVWLKLNKTKKNHYKFDNVSLCYDDVITASLERN RIKNLTGVKAKEFLVWIALSEIHVTDAAGKRNSIVGFGGRRSSSSTITFKTPVGLSKSFPLSLFVGGDEVATKSGIQLASRTDLLMLCVKGLKEEYAYIY SLADKEYAGNWGFSFCKSWGCTPRIQTSQDENRQNYRIRYTSFAPEKKTICVVAVTLTADQDAAAASGLWFKNSNKQVNKQST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49600			Protein of unknown function, D...		Lus10017087 [exp]	0	1
AT1G04880	ARID		HMG (high mobility group) box ...		Lus10016671 [exp]	13.1	0.8408
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10032280 [exp]	14.4	0.8599
AT3G13898			unknown protein		Lus10008387 [exp]	19.9	0.8509
AT2G21650	MYB	RSM1, ATRL2, ME...	RADIALIS-LIKE SANT/MYB 1, MATE...		Lus10040453 [exp]	28.0	0.8458
					Lus10034993 [exp]	28.3	0.8406
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Lus10004688 [exp]	38.7	0.8440
AT4G32295			unknown protein		Lus10002918 [exp]	39.1	0.8427
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10037666 [exp]	43.7	0.8425
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10031352 [exp]	44.6	0.7979
					Lus10038209 [exp]	45.8	0.8410

Compare expression of checked genes

Lus10017087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.