Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06520 229 / 6e-70 agenet domain-containing protein (.1) AT1G09320 202 / 5e-59 agenet domain-containing protein (.1) AT1G26540 110 / 2e-25 Agenet domain-containing protein (.1) AT1G11420 104 / 8e-24 ATDUF2 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1) AT2G47230 104 / 1e-23 ATDUF6 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) AT3G62300 91 / 4e-19 ATDUF7 DOMAIN OF UNKNOWN FUNCTION 724 7 (.1.2) AT1G03300 87 / 5e-18 ATDUF1 DOMAIN OF UNKNOWN FUNCTION 724 1 (.1) AT1G06340 74 / 1e-15 Plant Tudor-like protein (.1) AT5G23800 76 / 2e-14 ATDUF10 ,DUF 10 DOMAIN OF UNKNOWN FUNCTION 724 10 (.1) AT5G58610 61 / 1e-09 PHD finger transcription factor, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037805 [exp] 699 / 0 AT3G06520 271 / 9e-86 agenet domain-containing protein (.1) Lus10000615 [exp] 171 / 5e-47 AT1G16890 286 / 9e-95 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10000353 [exp] 171 / 3e-46 AT1G16890 313 / 3e-103 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10002437 [exp] 108 / 6e-25 AT3G62300 252 / 1e-73 DOMAIN OF UNKNOWN FUNCTION 724 7 (.1.2) Lus10010060 [exp] 107 / 3e-24 AT2G47230 168 / 2e-43 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) Lus10004508 [exp] 103 / 2e-23 AT2G47230 167 / 9e-43 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) Lus10010903 [exp] 96 / 3e-21 AT1G09320 136 / 3e-35 agenet domain-containing protein (.1) Lus10027325 [exp] 87 / 6e-20 AT1G06340 95 / 2e-25 Plant Tudor-like protein (.1) Lus10031429 [exp] 90 / 4e-19 AT1G09320 131 / 2e-33 agenet domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G011100 [exp] 192 / 2e-57 AT1G09320 264 / 3e-84 agenet domain-containing protein (.1) Potri.013G006900 [exp] 184 / 8e-54 AT1G09320 268 / 1e-85 agenet domain-containing protein (.1) Potri.002G192300 [exp] 129 / 5e-32 AT1G26540 201 / 3e-54 Agenet domain-containing protein (.1) Potri.014G117800 [exp] 125 / 1e-30 AT1G11420 194 / 1e-52 DOMAIN OF UNKNOWN FUNCTION 724 2 (.1) Potri.010G149301 [exp] 89 / 2e-21 AT3G06520 71 / 1e-15 agenet domain-containing protein (.1) Potri.009G151200 [exp] 84 / 5e-19 AT1G06340 141 / 3e-44 Plant Tudor-like protein (.1) Potri.010G126700 [exp] 64 / 1e-10 AT1G68580 478 / 1e-160 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.009G155250 [exp] 57 / 2e-10 AT1G06340 85 / 1e-22 Plant Tudor-like protein (.1) Potri.008G119400 [exp] 60 / 2e-09 AT1G68580 459 / 9e-154 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.1), agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.009G072600 [exp] 59 / 5e-09 AT5G58610 453 / 1e-139 PHD finger transcription factor, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF05641 [flax] [poplar] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Lus10017088 pacid=23167413 polypeptide=Lus10017088 locus=Lus10017088.g ID=Lus10017088.BGIv1.0 annot-version=v1.0 ATGCTGAGCTCCGATCTCACCGCCGGCGACCAAGTCGAAGTTCTGAAGCGGGACTGCGTCTCCGGCCAGGTCACCTACTACCCGGCCACCGTCCTCCGCT CACCTGCCAAGCAGCAGGACAAGATTCTGATCGAGTACCAGAGGATCACCAACGGCGCTATTCCGGCCAGGGAGCTCGTCGAGTCCGTTACCGTGAGGCC GGTGCCGCCACTCGACTACGGCGCGTGGTTTAAAGTGGACGACGACGTCGACGTTCACAGCGACAGTGGTTGGCATAGGGGAATCGTCAAGGGAATACTC GTCAACTCCAAGTATCTCGTGAGGTTCGCTCGCCGGAGCGAAGGAATCGTCTCGGAGCAGTGCACCCTGCGCCACCATCGGGAATGGATTGACGGCGCTT GGTCGCCTCCTCCTCCTCCGCCGGTACAACTTACTCAGAGAGAGCCAAAATCCAGAAAGATGAATCCGAAGGTGAAACTCGAGAAGAAGATGAAGAAGGA GAAGTCGGAAACAATGTTGCTGGTAGAAGGATCGAAGGTGGAAGTGAAAAGCGATGATGTAGGCTTCCAAGGTGCTTGGTTTGGTGGGGTTATCGTCGAT CACGTTGGGGAAGACAATTATTTGGTGGAATTTCTACACCTCATGACTGAAGATCAAACTGGTCCATTGAGGGAAGTGGTAAATGTTGACGACGTTAGAC CCTATCCCCCTGATGATGATCAGTCACTCACTTGTTACAAATACCCTGACAAAGTTGATGCGTGGTACAATGATGGCTGGTGGGAAGGTATGATTTTGAG AGTGGTGGATGGATCTGATGATAACTATGTGGTTTATTTCTCAACCACAGGCGACTTCGTTGAATTTCAAAGCTTGAATCTCCGCCCTCATTTGGATTGG ATCAATGGGGAATGGTTCAAGGAGAAAGTCGGGGACAACGAGGAGGAGTTGAAAAGAAGCTTAAAATCCTCCTCCTCCTCCTACGGGATTGGGATGAAGG TTGAGGTGAAAAGTGATGAAGCTGGTTACCAGGGTGCTTGGTTTGTGGGGGTCATTGTTGCTGTAAAGGAGAATGATAGGTTTTTGGTGCAGTATGACAA TTTGCTGACGGACGATGAAACTGATTATCTTAAGGAGGAAGTGAATGCTTGTGACGTCAGGCCTCGTCCTCCACAAGTGCCAGTTACCCACCACTATGGA CTGCTTGACGTTGTGGATGCTTGGAGTAATGATGCCTGGTGGGTTGGCAGCGTTATCAGAGTTTATCAAGAAATGAAGTACAGAGTCCTCTTTCCGGCAA ACGAAGAACTGGAATTTGAGCATTCCCAGTTGAGGCCTCATCTCGAATGGACTGGTAGCGAATGGTACTCTGTTCCTAAGGTACAATAA
AA sequence Show only first row Show all	>Lus10017088 pacid=23167413 polypeptide=Lus10017088 locus=Lus10017088.g ID=Lus10017088.BGIv1.0 annot-version=v1.0 MLSSDLTAGDQVEVLKRDCVSGQVTYYPATVLRSPAKQQDKILIEYQRITNGAIPARELVESVTVRPVPPLDYGAWFKVDDDVDVHSDSGWHRGIVKGIL VNSKYLVRFARRSEGIVSEQCTLRHHREWIDGAWSPPPPPPVQLTQREPKSRKMNPKVKLEKKMKKEKSETMLLVEGSKVEVKSDDVGFQGAWFGGVIVD HVGEDNYLVEFLHLMTEDQTGPLREVVNVDDVRPYPPDDDQSLTCYKYPDKVDAWYNDGWWEGMILRVVDGSDDNYVVYFSTTGDFVEFQSLNLRPHLDW INGEWFKEKVGDNEEELKRSLKSSSSSYGIGMKVEVKSDEAGYQGAWFVGVIVAVKENDRFLVQYDNLLTDDETDYLKEEVNACDVRPRPPQVPVTHHYG LLDVVDAWSNDAWWVGSVIRVYQEMKYRVLFPANEELEFEHSQLRPHLEWTGSEWYSVPKVQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06520			agenet domain-containing prote...		Lus10017088 [exp]	0	1
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10018283 [exp]	3.0	0.9741
					Lus10006724 [exp]	5.5	0.9717
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10032240 [exp]	5.7	0.9717
AT2G28490			RmlC-like cupins superfamily p...		Lus10011364 [exp]	6.9	0.9612
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10039736 [exp]	7.1	0.9642
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10041924 [exp]	8.0	0.9645
AT5G51560			Leucine-rich repeat protein ki...		Lus10031703 [exp]	10.2	0.9590
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Lus10008092 [exp]	11.2	0.9595
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Lus10009960 [exp]	12.0	0.9561
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10040333 [exp]	14.5	0.9517

Compare expression of checked genes

Lus10017088 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.