Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27030 338 / 7e-117 FADA, FAD4 FATTY ACID DESATURASE 4, fatty acid desaturase A (.1) AT2G22890 296 / 9e-101 Kua-ubiquitin conjugating enzyme hybrid localisation domain (.1) AT1G62190 291 / 1e-98 Kua-ubiquitin conjugating enzyme hybrid localisation domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037808 [exp] 505 / 0 AT4G27030 363 / 1e-126 FATTY ACID DESATURASE 4, fatty acid desaturase A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G424700 [exp] 370 / 8e-130 AT4G27030 386 / 2e-135 FATTY ACID DESATURASE 4, fatty acid desaturase A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10520 [flax] [poplar] TMEM189_B_dmain B domain of TMEM189, localisation domain
Representative CDS sequence Show only first row Show all	>Lus10017089 pacid=23167482 polypeptide=Lus10017089 locus=Lus10017089.g ID=Lus10017089.BGIv1.0 annot-version=v1.0 ATGTCTACCTTACACAACCACAGGTTCCTTCCCAAGCTACCTCGCCATTCCAATCTGGGCCGTGGCGCCTTCCGCCATCGGATAATCACGGTACGCTGCG CTGCCACGTCGTCAGTCCCTCTAACCACCAAGGATCTCGGTCTGAAGTCAACATGGTCGCACCGTGCATGGGTGGCAACAGGATGCACCACCGTTGTCTT TTCGCTGGCCAAGGCCGCTGTAGGAGCAGCAGCCAGCAGTACGCAGAATATTTGGTTGGAACCCTTACTCGCGGGATACATAGGCTACATATTGGCTGAT CTCAGCTCGGGGTTGTACCATTGGGGTATCGATAACTACGGCGATGAGTCCACACCAGTTTTCGGTTCACAAATTGAAGCATTCCAAGGTCACCACAGGT GGCCCTGGACTATTACCAGGCGCCAGTTTGCCAACAATCTACACTCACTGGCTCGTGTAGTGGCGTTGTGTGTGTTCCCAGTCGAGCTAATGTGCAATGA CCCTACTGTCCTTGGGTTCGTGGGGATGTTCTCCGGGTGTATTATGTTCAGCCAGCAGTTCCATGCTTGGGCTCACGGCACAAAGAGCAAGTTGCCGCCA TTGGTAGTGGTGTTGCAGGATGCCGGAGTTTTAGTATCGAGGGGACAGCACGCAGCGCATCACTGGGCACCTTACAACAACAATTACTGCATAGTGAGTG GGATCTGGAATCAGTTTCTGGATCAACACAAGGTGTTTCAGGCATTGGAGATGGTGCTGTATTTCAAGTTCGGGGTCAAACCTCGGTCCTGGAGTGACCC CAACTCCGCCTGGACAGAACAAGAACAAGAACAAGAAGAGATTATTCAGGAAAACTGA
AA sequence Show only first row Show all	>Lus10017089 pacid=23167482 polypeptide=Lus10017089 locus=Lus10017089.g ID=Lus10017089.BGIv1.0 annot-version=v1.0 MSTLHNHRFLPKLPRHSNLGRGAFRHRIITVRCAATSSVPLTTKDLGLKSTWSHRAWVATGCTTVVFSLAKAAVGAAASSTQNIWLEPLLAGYIGYILAD LSSGLYHWGIDNYGDESTPVFGSQIEAFQGHHRWPWTITRRQFANNLHSLARVVALCVFPVELMCNDPTVLGFVGMFSGCIMFSQQFHAWAHGTKSKLPP LVVVLQDAGVLVSRGQHAAHHWAPYNNNYCIVSGIWNQFLDQHKVFQALEMVLYFKFGVKPRSWSDPNSAWTEQEQEQEEIIQEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27030		FADA, FAD4	FATTY ACID DESATURASE 4, fatty...		Lus10017089 [exp]	0	1
AT1G53670		MSRB1, ATMSRB1	methionine sulfoxide reductase...		Lus10013727 [exp]	3.7	0.9182
AT2G46735			unknown protein		Lus10002690 [exp]	7.9	0.8936
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10016869 [exp]	8.0	0.8620
AT5G58770			Undecaprenyl pyrophosphate syn...		Lus10038313 [exp]	9.4	0.8768
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Lus10026795 [exp]	13.6	0.8838
AT1G02800		ATCEL2	cellulase 2 (.1)		Lus10017338 [exp]	13.6	0.8914
AT5G64840		ABCF5, ATGCN5	ATP-binding cassette F5, gener...		Lus10005798 [exp]	14.3	0.8827
AT3G18280			Bifunctional inhibitor/lipid-t...		Lus10033574 [exp]	16.7	0.8431
AT5G55570			unknown protein		Lus10008950 [exp]	17.7	0.8770
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Lus10039301 [exp]	18.7	0.8713

Compare expression of checked genes

Lus10017089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.